c_net_calculate #9
Description
hi, I’m encountering a problem when running the following code:
corr <- c_net_calculate(
otu_table,
method = "sparcc",
p.adjust.method = "fdr"
)
The following message appears:
sparcc is not supported on CRAN version. Please install zdk123/SpiecEasi from github and use the function sparcc.
Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), :
'data'的种类必需为矢量，但现在是'NULL'.
I installed SpiecEasi locally from a GitHub tarball (not from CRAN), but it still doesn’t work. I’m wondering whether there is a specific version requirement for SpiecEasi?
Here is my current environment:
R version 4.3.3 (2024-02-29 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 11 x64 (build 26200)
Matrix products: default
locale:
[1] LC_COLLATE=Chinese (Simplified)_China.utf8 LC_CTYPE=Chinese (Simplified)_China.utf8
[3] LC_MONETARY=Chinese (Simplified)_China.utf8 LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_China.utf8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] SpiecEasi_1.1.2 pcutils_0.2.9 dplyr_1.1.4 MetaNet_0.2.7 igraph_2.1.3
loaded via a namespace (and not attached):
[1] Matrix_1.6-5 glmnet_4.1-9 gtable_0.3.6 compiler_4.3.3 tidyselect_1.2.1
[6] Rcpp_1.1.0 stringr_1.5.1 parallel_4.3.3 dichromat_2.0-0.1 VGAM_1.1-13
[11] splines_4.3.3 scales_1.4.0 lattice_0.22-6 ggplot2_3.5.2 R6_2.6.1
[16] plyr_1.8.9 generics_0.1.4 shape_1.4.6.1 knitr_1.50 iterators_1.0.14
[21] MASS_7.3-60.0.1 tibble_3.3.0 pillar_1.11.0 RColorBrewer_1.1-3 rlang_1.1.6
[26] stringi_1.8.4 xfun_0.52 huge_1.3.5 cli_3.6.1 pulsar_0.3.11
[31] magrittr_2.0.3 foreach_1.5.2 grid_4.3.3 rstudioapi_0.17.1 lifecycle_1.0.4
[36] vctrs_0.6.5 evaluate_1.0.4 glue_1.8.0 farver_2.1.2 codetools_0.2-20
[41] survival_3.8-3 stats4_4.3.3 reshape2_1.4.4 tools_4.3.3 pkgconfig_2.0.3
Thank you very much, and I look forward to your reply.