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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -18,31 +18,6 @@ ko_targets="${10}"
1818target_KOs=" ${11} "
1919debug_flag=" ${12} "
2020
21- printf " \n\ntmp_dir: $tmp_dir \n"
22- printf " hmm_file: $hmm_file \n"
23- printf " num_cpus: $num_cpus \n"
24- printf " hmm_target_genes_total: $hmm_target_genes_total \n"
25- printf " output_dir: $output_dir \n"
26- printf " best_hit_mode: $best_hit_mode \n"
27- printf " additional_pfam_targets: $additional_pfam_targets \n"
28- printf " http_flag: $http_flag \n"
29- printf " ko_targets: $ko_targets \n"
30- printf " target_KOs: $target_KOs \n"
31- printf " debug_flag: $debug_flag \n\n"
32-
33- printf " \n\narg 2: $2 \n"
34- printf " arg 3: $3 \n"
35- printf " arg 4: $4 \n"
36- printf " arg 5: $5 \n"
37- printf " arg 6: $6 \n"
38- printf " arg 7: $7 \n"
39- printf " arg 8: $8 \n"
40- printf " arg 9: $9 \n"
41- printf " arg 10: ${10} \n"
42- printf " arg 11: ${11} \n"
43- printf " arg 12: ${12} \n\n"
44-
45-
4621assembly=$( echo " $1 " | cut -f 1)
4722downloaded_accession=$( echo " $1 " | cut -f 2)
4823
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