test fixes

Author: Mike Lee

CHANGELOG.md

@@ -9,6 +9,16 @@
 
 ### Fixed
 
+---
+
+
+## v1.14.1 (NOT RELEASED YET)
+
+### Added
+
+### Changed
+
+
 ---
 
 -->

bit/modules/cov_analyzer.py

@@ -206,7 +206,7 @@ def run_mosdepth(bam_file, window_bed_path, output_dir):
     mosdepth_out_prefix = str(Path(output_dir) / Path(bam_file).stem)
     cmd = f"mosdepth --by {window_bed_path} {mosdepth_out_prefix} {bam_file}"
 
-    with _spinner("mosdepthinitely in progress...", "mosdepthinitely done"):
+    with _spinner("mosdepthinitely in progress...", "mosdepthinitely done "):
         subprocess.run(cmd, shell=True)
 
     mosdepth_regions_file = f"{mosdepth_out_prefix}.regions.bed.gz"

bit/tests/test_cov_analyzer.py

@@ -146,7 +146,6 @@ def fake_run_mosdepth(bam_file, window_bed_path, output_dir):
 
     # expected outputs
     expected_files = [
-        outdir / "window-coverage-overview.txt",
         outdir / "window-coverage-overview.tsv",
         outdir / "window-coverage-stats.tsv.gz",
         outdir / "window-coverage-histogram.png",