v1.12.3

• modifications to bit-cov-analyzer
  • default --min-region-length set to 500 to help reduce overwhelming output and focus on larger regions
  • added a column for "zero_cov_bases" to output low- and high-coverage region tsvs

v1.12.2

• additions to bit-cov-analyzer
  • added N filtering
    • if an an identified low-coverage region is more than 50% Ns, it won't be reported in the output low-coverage table
  • added --min-region-length parameter, though the default is 0 (so smallest window size)
  • modularized this script

v1.12.1

• adding seed option to bit-gen-reads

v1.12.0

• integrating bit-ez-screen reads mode, and making the original "assembly-input" mode a subcommand (bit-ez-screen assembly)

v1.11.1

• fixing read-header formatting for paired read from bit-gen-reads
• fixing conda recipe meta.yaml and update-conda-package.sh

Full Changelog: v1.11.0...v1.11.1

v1.11.0

• making bit a python package (to facilitate sharing functions, formatting, etc. overtime and moving forward)
• making bit-version python instead of bash, and pulling version from setup.py now
• added conda recipe here instead of being maintained elsewhere

v1.10.9

• fixing bit-get-workflow to be able to pull from all prior releases instead of just recent ones

SRA download workflow v1.1.0

• updated so workflow can now deal with single-end sra objects also

v1.10.8

• fix to bit-dl-ncbi-assemblies
  • previously the duplication check on input target accessions wasn't working properly

v1.10.7

• updating bit-rename-fasta-headers to be able to take a specific prefix and suffix concurrently