FastGxC/DESCRIPTION at main · BalliuLab/FastGxC · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
Package: FastGxC
Title: Efficient and Powerful Software for Simulating Data and Detecting Context-specific eQTL Effects in Multi-context Genomic Studies
Version: 1.0.0
Authors@R: c(
    person("Charlie", "Wang", , "charliewang@g.ucla.edu", role = "aut",
           comment = c(ORCID = "0009-0003-1672-0774")),
    person("Lena", "Krockenberger", , "lkrocken@g.ucla.edu", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0002-5987-5496")),
    person("Anthony", "Zhao", , "azhao05@g.ucla.edu", role = "aut"),
    person("Brunilda", "Balliu", , "bballiu@g.ucla.edu", role = c("aut", "fnd")))
Description: Functions to run FastGxC decomposition and subsequent context-specific eQTL mapping with multiple testing adjustment. This software also can be used to simulate data and run eQTL mapping on toy examples.
Imports:
    dplyr,
    data.table,
    MatrixEQTL,
    mvtnorm,
    reshape2,
    magrittr,
    TreeQTL,
    matrixcalc,
    reticulate,
    readr,
    Rcpp
LinkingTo:
    Rcpp
Suggests:
    qvalue,
    testthat (>= 3.0.0),
    TreeBH,
    knitr,
    rmarkdown
Depends:
    R (>= 4.1.0),
    dplyr,
    data.table,
    MatrixEQTL,
    mvtnorm,
    reshape2,
    magrittr,
    TreeQTL,
    matrixcalc,
    reticulate
License: GPL-3 + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Config/testthat/edition: 3