From fa2b5e8585a0ab4a0fba0715c7c735eb45e7fde3 Mon Sep 17 00:00:00 2001 From: Richard Rigby Date: Mon, 30 Mar 2026 09:26:48 +0100 Subject: [PATCH 1/2] VIGNETTES: Rename vignettes files MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit To avoid package build WARNING, vignette file names should not start with numbers: ``` Subdirectory 'inst/doc' contains invalid file names: ‘01_pfwim_workflow.Rmd’ ‘02_metawebs.Rmd’ ‘03_realised_webs.Rmd’ ... ``` Addresses #6 --- vignettes/{01_pfwim_workflow.Rmd => pfwim_01_workflow.Rmd} | 0 vignettes/{02_metawebs.Rmd => pfwim_02_metawebs.Rmd} | 0 vignettes/{03_realised_webs.Rmd => pfwim_03_realised_webs.Rmd} | 0 3 files changed, 0 insertions(+), 0 deletions(-) rename vignettes/{01_pfwim_workflow.Rmd => pfwim_01_workflow.Rmd} (100%) rename vignettes/{02_metawebs.Rmd => pfwim_02_metawebs.Rmd} (100%) rename vignettes/{03_realised_webs.Rmd => pfwim_03_realised_webs.Rmd} (100%) diff --git a/vignettes/01_pfwim_workflow.Rmd b/vignettes/pfwim_01_workflow.Rmd similarity index 100% rename from vignettes/01_pfwim_workflow.Rmd rename to vignettes/pfwim_01_workflow.Rmd diff --git a/vignettes/02_metawebs.Rmd b/vignettes/pfwim_02_metawebs.Rmd similarity index 100% rename from vignettes/02_metawebs.Rmd rename to vignettes/pfwim_02_metawebs.Rmd diff --git a/vignettes/03_realised_webs.Rmd b/vignettes/pfwim_03_realised_webs.Rmd similarity index 100% rename from vignettes/03_realised_webs.Rmd rename to vignettes/pfwim_03_realised_webs.Rmd From b1238f1cd88680d0684fa61c9ad1f36d85b4f724 Mon Sep 17 00:00:00 2001 From: Richard Rigby Date: Mon, 30 Mar 2026 09:28:10 +0100 Subject: [PATCH 2/2] VIGNETTES: Remove reference to non existent data MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Remove code example containing reference to non existen data from vignette 01: ``` In data("interactions", package = "pfwim") : data set ‘interactions’ not found ``` Addresses #7 --- vignettes/pfwim_01_workflow.Rmd | 1 - 1 file changed, 1 deletion(-) diff --git a/vignettes/pfwim_01_workflow.Rmd b/vignettes/pfwim_01_workflow.Rmd index fda7bb8..cb0b67d 100644 --- a/vignettes/pfwim_01_workflow.Rmd +++ b/vignettes/pfwim_01_workflow.Rmd @@ -30,7 +30,6 @@ library(pfwim) # Load example data included in the package data("traits", package = "pfwim") data("feeding_rules", package = "pfwim") -data("interactions", package = "pfwim") # internal edgelist for tests ``` ## Infer Edgelist