From 73308340899e69c6986edea0986c5bbd02d83897 Mon Sep 17 00:00:00 2001
From: Richard Rigby <r.rigby@leeds.ac.uk>
Date: Mon, 30 Mar 2026 07:52:44 +0100
Subject: [PATCH 1/2] README: Update `infer_edgelist()` example

Example fails:

```
> edgelist <- infer_edgelist(
  data = traits,
  cat_combo_list = feeding_rules,
  col_taxon = "species",
  certainty_req = "all",
  allow_self = FALSE
)

[1] "feeding"
[1] "motility"
[1] "habitat"
[1] "size"
Error in infer_edgelist(data = traits, cat_combo_list = feeding_rules,  :
  object 'fw_match_traits3' not found
```

Remove `allow_self = FALSE` options, to match example in the workflow vignette,
which does not fail.

Addresses #2
---
 README.md | 1 -
 1 file changed, 1 deletion(-)

diff --git a/README.md b/README.md
index d17dd6e..82e12ba 100644
--- a/README.md
+++ b/README.md
@@ -42,7 +42,6 @@ edgelist <- infer_edgelist(
   cat_combo_list = feeding_rules,
   col_taxon = "species",
   certainty_req = "all",
-  allow_self = FALSE
 )
 
 # Show first few interactions

From 983ecf1bb1b79545c8ed2221c82d99293fb70196 Mon Sep 17 00:00:00 2001
From: Richard Rigby <r.rigby@leeds.ac.uk>
Date: Mon, 30 Mar 2026 07:55:10 +0100
Subject: [PATCH 2/2] README: Update `libraru()` example
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Example fails:

```
Error in library(pfwim.R) : there is no package called ‘pfwim.R’
```

Remove `.R`  from library name.

Addresses #3
---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 82e12ba..c644b76 100644
--- a/README.md
+++ b/README.md
@@ -20,7 +20,7 @@ devtools::install_github("BecksLab/pfwim")
 ## Load Example Data
 
 ```
-library(pfwim.R)
+library(pfwim)
 
 # Trait data
 data("traits", package = "pfwim")