- Updated visulisation test as this was failing with the new pathway selection logic..

Author: BenjaminIsaac0111

tests/test_visualization.py

@@ -12,10 +12,19 @@
 
 matplotlib.use("Agg")
 from spatial_transcript_former.predict import (
-    CORE_PATHWAYS,
     plot_training_summary,
 )
 
+# Representative pathways to highlight in summary plots (local copy for testing)
+CORE_PATHWAYS = [
+    "APOPTOSIS",
+    "DNA_REPAIR",
+    "G2M_CHECKPOINT",
+    "MTORC1_SIGNALING",
+    "P53_PATHWAY",
+    "MYC_TARGETS_V1",
+]
+
 # ---------------------------------------------------------------------------
 # Fixtures
 # ---------------------------------------------------------------------------