From image.sc:
Hi @haesleinhuepf, is it possible to use a 2D polygon in the shape layer to crop the same region across all the slices of a confocal images using napari-crop plugin. I get the following IndexError: incorrect shape
calling <psygnal._weak_callback._StrongFunction object at 0x192e66220> with args=(False,) caused IndexError: Incorrect shape ((49, 648, 584)) of integer indices for dimension with size 49.
Box shape works but I prefer to use polygon to crop individual 3D aggregates of cells for downstream analysis. Thanks, Ali
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From image.sc:
Hi @haesleinhuepf, is it possible to use a 2D polygon in the shape layer to crop the same region across all the slices of a confocal images using napari-crop plugin. I get the following IndexError: incorrect shape
calling <psygnal._weak_callback._StrongFunction object at 0x192e66220> with args=(False,) caused IndexError: Incorrect shape ((49, 648, 584)) of integer indices for dimension with size 49.
Box shape works but I prefer to use polygon to crop individual 3D aggregates of cells for downstream analysis. Thanks, Ali
Read more