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Polygon Cropping not working  #49

@haesleinhuepf

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@haesleinhuepf

From image.sc:

Hi @haesleinhuepf, is it possible to use a 2D polygon in the shape layer to crop the same region across all the slices of a confocal images using napari-crop plugin. I get the following IndexError: incorrect shape

calling <psygnal._weak_callback._StrongFunction object at 0x192e66220> with args=(False,) caused IndexError: Incorrect shape ((49, 648, 584)) of integer indices for dimension with size 49.

Box shape works but I prefer to use polygon to crop individual 3D aggregates of cells for downstream analysis. Thanks, Ali

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