MedBioInfoCloud/NAMESPACE at master · BioInfoCloud/MedBioInfoCloud · GitHub

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# Generated by roxygen2: do not edit by hand

export("%>%")
export(Counts2FPKM)
export(Counts2TPM)
export(FPKM2TPM)
export(GO_KEGG.enrichVisual_barplot)
export(GSEA.baseMSIGDB)
export(GeneSetCollection.to.df)
export(ImmuCellAI_mouse)
export(Met450prepare)
export(MultivariateCOX)
export(MultivariateCOX.verify)
export(RNAseqDataConversion)
export(RNAseqDataTrans)
export(TCGA_Clin_Analysis)
export(UnivariateCOX)
export(WGCNA.ModulesPhenotype)
export(WGCNA.ModulesScoresys)
export(WGCNA.blockwiseModules)
export(WGCNA.hubgeneBasedgeneCor)
export(arrayDataDEA_limma)
export(calFUNscore)
export(cell_type_correlation)
export(colorScheme)
export(common_bar)
export(compensation)
export(cox.forestplot)
export(delTCGA_dup_sample)
export(dlTCGAmiRNAdata)
export(enrichCirBarchar)
export(exe.gseGO_GSEA)
export(exeGO_KEGG)
export(exeGO_KEGG2)
export(featureSelect.UnivariateCox)
export(featureSelect.baseSur)
export(featureSelect.lasso)
export(featureSelect.randomForest)
export(filterGeneTypeExpr)
export(geneDEAnalysis)
export(geneHighLowExpGroupData)
export(gene_ref_weight_mt)
export(geneset2gmt)
export(get.geneExpbasedonCor)
export(getGeneBaseInfo)
export(getGeneExpData.pancancer)
export(getGeneExpData.pancancer2)
export(getGeneInfoFromeGTF)
export(getGeneLenFromeGTF)
export(getGeneTypeInfoFromeGTF)
export(getInfiltDataOfTCGAsample)
export(getResult)
export(getTCGA_CNV.data)
export(getTCGA_ClinicalData)
export(getTCGA_MethylationData)
export(getTCGA_ProteinExp)
export(getTCGA_RNAseqData)
export(getTCGA_SNV_Masked_data)
export(getTCGA_miRNAEQ)
export(getTCGA_miRNA_IsoformEQ)
export(get_random_FUN)
export(ggplotGenePancancerExp)
export(immune_infiltate_calculate)
export(layer_norm)
export(marker_tag)
export(marker_times_count)
export(mergeClinExp)
export(mergeSurExp)
export(outputGmtFile)
export(plotDEGvolcanoFig)
export(preCirBarchartData)
export(preGeneExpAndClinDate)
export(preGeneExpMatrixFromTCGA)
export(preRankedGeneList)
export(preVisEnrishResults)
export(read.gmt.to.getGmt)
export(readGISTIC)
export(readMet450data)
export(read_copy_number_variation)
export(read_gene_level_copy_number)
export(sample_ratio)
export(scoringSys)
export(selectDEG)
export(splitTCGAmatrix)
export(tidy.gmt)
export(tidyGene.fromeReactome)
import(BiocGenerics)
import(GSVA)
import(RColorBrewer)
import(dplyr)
import(ggplot2)
import(ggrepel)
import(magrittr)
import(stringr)
importFrom(RColorBrewer,brewer.pal)
importFrom(clusterProfiler,GSEA)
importFrom(dplyr,arrange)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,slice_head)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_jitterdodge)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,ylim)
importFrom(ggpubr,stat_compare_means)
importFrom(magrittr,"%>%")
importFrom(msigdbr,msigdbr)
importFrom(msigdbr,msigdbr_collections)
importFrom(msigdbr,msigdbr_species)
importFrom(purrr,map2_dfr)
importFrom(reshape2,dcast)
importFrom(rlang,sym)
importFrom(stats,as.formula)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(stringr,str_to_title)
importFrom(survival,Surv)
importFrom(survival,coxph)
importFrom(survival,survfit)
importFrom(survminer,ggsurvplot)