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BioProtect Server

R Dependencies

sudo apt update
sudo apt install -y \
    r-base \
    libpq-dev \
    libssl-dev \
    libcurl4-openssl-dev \
    libxml2-dev \
    libudunits2-dev \
    libgdal-dev \
    libgeos-dev \
    libproj-dev \
    coinor-libcbc-dev \
    cmake \
    g++ \
    make \
    pkg-config

install.packages(c("sf","DBI","RPostgres","prioritizr","Matrix","jsonlite","rcbc"),
                 repos="https://cloud.r-project.org")

prioritizr automatically detects and uses rcbc if installed. You may need to install gurobi or rsymphony if you want alternative solvers — but rcbc is fully supported.

sudo apt update && sudo apt install -y coinor-libcbc-dev coinor-libcbc3 coinor-cbc

rcbc needs installing from git see here - https://github.com/dirkschumacher/rcbc