SPRINT/setup.py at sprint · Computational-Machine-Intelligence/SPRINT · GitHub

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# Setup script for Blast framework

from setuptools import setup, find_packages

# Read README with error handling for encoding issues
try:
    with open("README.md", "r", encoding="utf-8", errors="ignore") as fh:
        long_description = fh.read()
except Exception:
    long_description = "SPRINT: A PyTorch Library for TCR-peptide Binding Prediction"

# Read requirements
try:
    with open("requirements.txt", "r", encoding="utf-8") as fh:
        requirements = [line.strip() for line in fh if line.strip() and not line.startswith("#")]
except Exception:
    requirements = []

setup(
    name="sprint-benchmark",
    version="0.1.0",
    author="Sprint Team",
    author_email="sprint@example.com",
    description="A PyTorch Library for Immunogenicity Analysis",
    long_description=long_description,
    long_description_content_type="text/markdown",
    url="https://github.com/blast-team/blast-main",
    packages=find_packages(),
    classifiers=[
        "Development Status :: 3 - Alpha",
        "Intended Audience :: Science/Research",
        "License :: OSI Approved :: MIT License",
        "Operating System :: OS Independent",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "Programming Language :: Python :: 3.11",
        "Programming Language :: Python :: 3.12",
        "Topic :: Scientific/Engineering :: Artificial Intelligence",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
    ],
    python_requires=">=3.8",
    install_requires=requirements,
    extras_require={
        "dev": [
            "pytest>=6.0",
            "pytest-cov>=2.10",
            "black>=21.0",
            "flake8>=3.8",
            "mypy>=0.800",
        ],
        "docs": [
            "sphinx>=4.0",
            "sphinx-rtd-theme>=0.5",
        ],
    },
    entry_points={
        "console_scripts": [
            "sprint-train=sprint.cli:train_cli",
            "sprint-eval=sprint.cli:eval_cli",
            "sprint-benchmark=sprint.cli:benchmark_cli",
        ],
    },
    include_package_data=True,
    package_data={
        "sprint": [
            "configs/*.yaml",
            "configs/*/*.yaml",
            "methods/*/TCR_Autoencoder/*.pt",
        ],
    },
)