| \n", + " | GEX_n_genes_by_counts | \n", + "GEX_pct_counts_mt | \n", + "GEX_size_factors | \n", + "GEX_phase | \n", + "ADT_n_antibodies_by_counts | \n", + "ADT_total_counts | \n", + "ADT_iso_count | \n", + "cell_type | \n", + "batch | \n", + "ADT_pseudotime_order | \n", + "... | \n", + "DonorRace | \n", + "Ethnicity | \n", + "DonorGender | \n", + "QCMeds | \n", + "DonorSmoker | \n", + "is_train | \n", + "level1 | \n", + "level2 | \n", + "level3 | \n", + "description | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "3632 | \n", + "4.470490 | \n", + "2.311520 | \n", + "G2M | \n", + "135 | \n", + "4152.0 | \n", + "24.0 | \n", + "NK | \n", + "s4d1 | \n", + "NaN | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "Natural Killer Cells | \n", + "NK | \n", + "NK | \n", + "Natural Killer Cells | \n", + "
| 1 | \n", + "1781 | \n", + "8.843379 | \n", + "0.789157 | \n", + "G2M | \n", + "138 | \n", + "6323.0 | \n", + "30.0 | \n", + "NK | \n", + "s4d1 | \n", + "NaN | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "Natural Killer Cells | \n", + "NK | \n", + "NK | \n", + "Natural Killer Cells | \n", + "
| 2 | \n", + "1391 | \n", + "4.891304 | \n", + "0.556811 | \n", + "G1 | \n", + "137 | \n", + "5038.0 | \n", + "48.0 | \n", + "CD8+ T CD69+ CD45RA+ | \n", + "s4d1 | \n", + "NaN | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "CD8+ T Cells | \n", + "CD8+ T CD69+ CD45RA+ | \n", + "CD8+ T Cells expressing CD69 and CD45RA | \n", + "
| 3 | \n", + "1789 | \n", + "7.412587 | \n", + "0.733487 | \n", + "G2M | \n", + "134 | \n", + "3586.0 | \n", + "26.0 | \n", + "NK CD158e1+ | \n", + "s4d1 | \n", + "NaN | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "Natural Killer Cells | \n", + "NK CD158e1+ | \n", + "NK CD158e1+ | \n", + "Natural Killer Cells expressing CD158e1 | \n", + "
| 4 | \n", + "3644 | \n", + "3.935315 | \n", + "2.522098 | \n", + "G1 | \n", + "134 | \n", + "2841.0 | \n", + "32.0 | \n", + "HSC | \n", + "s4d1 | \n", + "0.352826 | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "Hematopoietic Stem Cells and Progenitors | \n", + "HSC | \n", + "HSC | \n", + "Hematopoietic Stem Cells | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 15061 | \n", + "1855 | \n", + "8.779892 | \n", + "0.702011 | \n", + "G2M | \n", + "124 | \n", + "2093.0 | \n", + "12.0 | \n", + "Naive CD20+ B IGKC- | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "B Cells and Plasma Cells | \n", + "Naive B Cells | \n", + "Naive CD20+ B IGKC- | \n", + "Naive B Cells expressing CD20, not IGKC | \n", + "
| 15062 | \n", + "1484 | \n", + "4.974369 | \n", + "0.508755 | \n", + "S | \n", + "124 | \n", + "2695.0 | \n", + "14.0 | \n", + "CD8+ T naive | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "CD8+ T Cells | \n", + "CD8+ T naive | \n", + "Naive CD8+ T Cells | \n", + "
| 15063 | \n", + "801 | \n", + "8.842443 | \n", + "0.232119 | \n", + "G1 | \n", + "132 | \n", + "3590.0 | \n", + "14.0 | \n", + "T reg | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "Special T Cell Types | \n", + "T reg | \n", + "Regulatory T Cells | \n", + "
| 15064 | \n", + "1630 | \n", + "8.500611 | \n", + "0.549119 | \n", + "G1 | \n", + "133 | \n", + "5432.0 | \n", + "17.0 | \n", + "CD4+ T naive | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "CD4+ T Cells | \n", + "CD4+ T naive | \n", + "Naive CD4+ T Cells | \n", + "
| 15065 | \n", + "1746 | \n", + "7.074221 | \n", + "0.661751 | \n", + "G2M | \n", + "137 | \n", + "2665.0 | \n", + "10.0 | \n", + "CD8+ T naive | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "CD8+ T Cells | \n", + "CD8+ T naive | \n", + "Naive CD8+ T Cells | \n", + "
15066 rows × 30 columns
\n", + "| \n", + " | GEX_n_genes_by_counts | \n", + "GEX_pct_counts_mt | \n", + "GEX_size_factors | \n", + "GEX_phase | \n", + "ADT_n_antibodies_by_counts | \n", + "ADT_total_counts | \n", + "ADT_iso_count | \n", + "cell_type | \n", + "batch | \n", + "ADT_pseudotime_order | \n", + "... | \n", + "DonorRace | \n", + "Ethnicity | \n", + "DonorGender | \n", + "QCMeds | \n", + "DonorSmoker | \n", + "is_train | \n", + "level1 | \n", + "level2 | \n", + "level3 | \n", + "description | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "3632 | \n", + "4.470490 | \n", + "2.311520 | \n", + "G2M | \n", + "135 | \n", + "4152.0 | \n", + "24.0 | \n", + "NK | \n", + "s4d1 | \n", + "NaN | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "Natural Killer Cells | \n", + "NK | \n", + "NK | \n", + "Natural Killer Cells | \n", + "
| 1 | \n", + "1781 | \n", + "8.843379 | \n", + "0.789157 | \n", + "G2M | \n", + "138 | \n", + "6323.0 | \n", + "30.0 | \n", + "NK | \n", + "s4d1 | \n", + "NaN | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "Natural Killer Cells | \n", + "NK | \n", + "NK | \n", + "Natural Killer Cells | \n", + "
| 2 | \n", + "1391 | \n", + "4.891304 | \n", + "0.556811 | \n", + "G1 | \n", + "137 | \n", + "5038.0 | \n", + "48.0 | \n", + "CD8+ T CD69+ CD45RA+ | \n", + "s4d1 | \n", + "NaN | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "CD8+ T Cells | \n", + "CD8+ T CD69+ CD45RA+ | \n", + "CD8+ T Cells expressing CD69 and CD45RA | \n", + "
| 3 | \n", + "1789 | \n", + "7.412587 | \n", + "0.733487 | \n", + "G2M | \n", + "134 | \n", + "3586.0 | \n", + "26.0 | \n", + "NK CD158e1+ | \n", + "s4d1 | \n", + "NaN | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "Natural Killer Cells | \n", + "NK CD158e1+ | \n", + "NK CD158e1+ | \n", + "Natural Killer Cells expressing CD158e1 | \n", + "
| 4 | \n", + "3644 | \n", + "3.935315 | \n", + "2.522098 | \n", + "G1 | \n", + "134 | \n", + "2841.0 | \n", + "32.0 | \n", + "HSC | \n", + "s4d1 | \n", + "0.352826 | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "Hematopoietic Stem Cells and Progenitors | \n", + "HSC | \n", + "HSC | \n", + "Hematopoietic Stem Cells | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 15061 | \n", + "1855 | \n", + "8.779892 | \n", + "0.702011 | \n", + "G2M | \n", + "124 | \n", + "2093.0 | \n", + "12.0 | \n", + "Naive CD20+ B IGKC- | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "B Cells and Plasma Cells | \n", + "Naive B Cells | \n", + "Naive CD20+ B IGKC- | \n", + "Naive B Cells expressing CD20, not IGKC | \n", + "
| 15062 | \n", + "1484 | \n", + "4.974369 | \n", + "0.508755 | \n", + "S | \n", + "124 | \n", + "2695.0 | \n", + "14.0 | \n", + "CD8+ T naive | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "CD8+ T Cells | \n", + "CD8+ T naive | \n", + "Naive CD8+ T Cells | \n", + "
| 15063 | \n", + "801 | \n", + "8.842443 | \n", + "0.232119 | \n", + "G1 | \n", + "132 | \n", + "3590.0 | \n", + "14.0 | \n", + "T reg | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "Special T Cell Types | \n", + "T reg | \n", + "Regulatory T Cells | \n", + "
| 15064 | \n", + "1630 | \n", + "8.500611 | \n", + "0.549119 | \n", + "G1 | \n", + "133 | \n", + "5432.0 | \n", + "17.0 | \n", + "CD4+ T naive | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "CD4+ T Cells | \n", + "CD4+ T naive | \n", + "Naive CD4+ T Cells | \n", + "
| 15065 | \n", + "1746 | \n", + "7.074221 | \n", + "0.661751 | \n", + "G2M | \n", + "137 | \n", + "2665.0 | \n", + "10.0 | \n", + "CD8+ T naive | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "CD8+ T Cells | \n", + "CD8+ T naive | \n", + "Naive CD8+ T Cells | \n", + "
15066 rows × 30 columns
\n", + "| \n", + " | GEX_n_genes_by_counts | \n", + "GEX_pct_counts_mt | \n", + "GEX_size_factors | \n", + "GEX_phase | \n", + "ADT_n_antibodies_by_counts | \n", + "ADT_total_counts | \n", + "ADT_iso_count | \n", + "cell_type | \n", + "batch | \n", + "ADT_pseudotime_order | \n", + "... | \n", + "DonorRace | \n", + "Ethnicity | \n", + "DonorGender | \n", + "QCMeds | \n", + "DonorSmoker | \n", + "is_train | \n", + "level1 | \n", + "level2 | \n", + "level3 | \n", + "description | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "3632 | \n", + "4.470490 | \n", + "2.311520 | \n", + "G2M | \n", + "135 | \n", + "4152.0 | \n", + "24.0 | \n", + "NK | \n", + "s4d1 | \n", + "NaN | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "Natural Killer Cells | \n", + "NK | \n", + "NK | \n", + "Natural Killer Cells | \n", + "
| 1 | \n", + "1781 | \n", + "8.843379 | \n", + "0.789157 | \n", + "G2M | \n", + "138 | \n", + "6323.0 | \n", + "30.0 | \n", + "NK | \n", + "s4d1 | \n", + "NaN | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "Natural Killer Cells | \n", + "NK | \n", + "NK | \n", + "Natural Killer Cells | \n", + "
| 2 | \n", + "1391 | \n", + "4.891304 | \n", + "0.556811 | \n", + "G1 | \n", + "137 | \n", + "5038.0 | \n", + "48.0 | \n", + "CD8+ T CD69+ CD45RA+ | \n", + "s4d1 | \n", + "NaN | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "CD8+ T Cells | \n", + "CD8+ T CD69+ CD45RA+ | \n", + "CD8+ T Cells expressing CD69 and CD45RA | \n", + "
| 3 | \n", + "1789 | \n", + "7.412587 | \n", + "0.733487 | \n", + "G2M | \n", + "134 | \n", + "3586.0 | \n", + "26.0 | \n", + "NK CD158e1+ | \n", + "s4d1 | \n", + "NaN | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "Natural Killer Cells | \n", + "NK CD158e1+ | \n", + "NK CD158e1+ | \n", + "Natural Killer Cells expressing CD158e1 | \n", + "
| 4 | \n", + "3644 | \n", + "3.935315 | \n", + "2.522098 | \n", + "G1 | \n", + "134 | \n", + "2841.0 | \n", + "32.0 | \n", + "HSC | \n", + "s4d1 | \n", + "0.352826 | \n", + "... | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "Hematopoietic Stem Cells and Progenitors | \n", + "HSC | \n", + "HSC | \n", + "Hematopoietic Stem Cells | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 15061 | \n", + "1855 | \n", + "8.779892 | \n", + "0.702011 | \n", + "G2M | \n", + "124 | \n", + "2093.0 | \n", + "12.0 | \n", + "Naive CD20+ B IGKC- | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "B Cells and Plasma Cells | \n", + "Naive B Cells | \n", + "Naive CD20+ B IGKC- | \n", + "Naive B Cells expressing CD20, not IGKC | \n", + "
| 15062 | \n", + "1484 | \n", + "4.974369 | \n", + "0.508755 | \n", + "S | \n", + "124 | \n", + "2695.0 | \n", + "14.0 | \n", + "CD8+ T naive | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "CD8+ T Cells | \n", + "CD8+ T naive | \n", + "Naive CD8+ T Cells | \n", + "
| 15063 | \n", + "801 | \n", + "8.842443 | \n", + "0.232119 | \n", + "G1 | \n", + "132 | \n", + "3590.0 | \n", + "14.0 | \n", + "T reg | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "Special T Cell Types | \n", + "T reg | \n", + "Regulatory T Cells | \n", + "
| 15064 | \n", + "1630 | \n", + "8.500611 | \n", + "0.549119 | \n", + "G1 | \n", + "133 | \n", + "5432.0 | \n", + "17.0 | \n", + "CD4+ T naive | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "CD4+ T Cells | \n", + "CD4+ T naive | \n", + "Naive CD4+ T Cells | \n", + "
| 15065 | \n", + "1746 | \n", + "7.074221 | \n", + "0.661751 | \n", + "G2M | \n", + "137 | \n", + "2665.0 | \n", + "10.0 | \n", + "CD8+ T naive | \n", + "s4d9 | \n", + "NaN | \n", + "... | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "test | \n", + "T Cells | \n", + "CD8+ T Cells | \n", + "CD8+ T naive | \n", + "Naive CD8+ T Cells | \n", + "
15066 rows × 30 columns
\n", + "| \n", + " | GEX_n_genes_by_counts | \n", + "GEX_pct_counts_mt | \n", + "GEX_size_factors | \n", + "GEX_phase | \n", + "ADT_n_antibodies_by_counts | \n", + "ADT_total_counts | \n", + "ADT_iso_count | \n", + "cell_type | \n", + "batch | \n", + "ADT_pseudotime_order | \n", + "GEX_pseudotime_order | \n", + "Samplename | \n", + "Site | \n", + "DonorNumber | \n", + "Modality | \n", + "VendorLot | \n", + "DonorID | \n", + "DonorAge | \n", + "DonorBMI | \n", + "DonorBloodType | \n", + "DonorRace | \n", + "Ethnicity | \n", + "DonorGender | \n", + "QCMeds | \n", + "DonorSmoker | \n", + "is_train | \n", + "second_hierarchy | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GCATTAGCATAAGCGG-1-s1d1 | \n", + "893 | \n", + "6.723979 | \n", + "0.356535 | \n", + "G1 | \n", + "115 | \n", + "2828.0 | \n", + "5.0 | \n", + "Naive CD20+ B IGKC+ | \n", + "s1d1 | \n", + "NaN | \n", + "NaN | \n", + "site1_donor1_cite | \n", + "site1 | \n", + "donor1 | \n", + "cite | \n", + "3054455 | \n", + "15078 | \n", + "34 | \n", + "24.8 | \n", + "B- | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "train | \n", + "B Cells | \n", + "
| TACAGGTGTTAGAGTA-1-s1d1 | \n", + "2606 | \n", + "8.008829 | \n", + "1.292643 | \n", + "S | \n", + "137 | \n", + "8819.0 | \n", + "21.0 | \n", + "CD14+ Mono | \n", + "s1d1 | \n", + "NaN | \n", + "NaN | \n", + "site1_donor1_cite | \n", + "site1 | \n", + "donor1 | \n", + "cite | \n", + "3054455 | \n", + "15078 | \n", + "34 | \n", + "24.8 | \n", + "B- | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "train | \n", + "Monocytes | \n", + "
| AGGATCTAGGTCTACT-1-s1d1 | \n", + "1867 | \n", + "6.959707 | \n", + "0.970558 | \n", + "G2M | \n", + "116 | \n", + "4088.0 | \n", + "12.0 | \n", + "Naive CD20+ B IGKC+ | \n", + "s1d1 | \n", + "NaN | \n", + "NaN | \n", + "site1_donor1_cite | \n", + "site1 | \n", + "donor1 | \n", + "cite | \n", + "3054455 | \n", + "15078 | \n", + "34 | \n", + "24.8 | \n", + "B- | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "train | \n", + "B Cells | \n", + "
| GTAGAAAGTGACACAG-1-s1d1 | \n", + "2360 | \n", + "6.109234 | \n", + "1.232604 | \n", + "G2M | \n", + "124 | \n", + "4447.0 | \n", + "9.0 | \n", + "HSC | \n", + "s1d1 | \n", + "NaN | \n", + "0.000000 | \n", + "site1_donor1_cite | \n", + "site1 | \n", + "donor1 | \n", + "cite | \n", + "3054455 | \n", + "15078 | \n", + "34 | \n", + "24.8 | \n", + "B- | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "train | \n", + "Progenitors and Stem Cells | \n", + "
| TCCGAAAAGGATCATA-1-s1d1 | \n", + "455 | \n", + "0.294394 | \n", + "0.044585 | \n", + "S | \n", + "132 | \n", + "12875.0 | \n", + "24.0 | \n", + "Reticulocyte | \n", + "s1d1 | \n", + "0.735261 | \n", + "0.964631 | \n", + "site1_donor1_cite | \n", + "site1 | \n", + "donor1 | \n", + "cite | \n", + "3054455 | \n", + "15078 | \n", + "34 | \n", + "24.8 | \n", + "B- | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "train | \n", + "Erythroid Lineage | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| GTGTAACCATTAAGCC-1-s3d7 | \n", + "1879 | \n", + "7.053232 | \n", + "1.254860 | \n", + "G2M | \n", + "109 | \n", + "570.0 | \n", + "6.0 | \n", + "CD14+ Mono | \n", + "s3d7 | \n", + "NaN | \n", + "NaN | \n", + "site3_donor7_cite | \n", + "site3 | \n", + "donor7 | \n", + "cite | \n", + "3054734 | \n", + "11466 | \n", + "22 | \n", + "31.5 | \n", + "A+ | \n", + "Asian | \n", + "NOT HISPANIC OR LATINO | \n", + "Female | \n", + "True | \n", + "Nonsmoker | \n", + "train | \n", + "Monocytes | \n", + "
| CAGCCAGCAACGCATT-1-s3d7 | \n", + "1640 | \n", + "6.559514 | \n", + "1.068252 | \n", + "G2M | \n", + "111 | \n", + "574.0 | \n", + "5.0 | \n", + "CD14+ Mono | \n", + "s3d7 | \n", + "NaN | \n", + "NaN | \n", + "site3_donor7_cite | \n", + "site3 | \n", + "donor7 | \n", + "cite | \n", + "3054734 | \n", + "11466 | \n", + "22 | \n", + "31.5 | \n", + "A+ | \n", + "Asian | \n", + "NOT HISPANIC OR LATINO | \n", + "Female | \n", + "True | \n", + "Nonsmoker | \n", + "train | \n", + "Monocytes | \n", + "
| TCAGCAAAGGTCGTAG-1-s3d7 | \n", + "153 | \n", + "0.085660 | \n", + "0.014308 | \n", + "G1 | \n", + "104 | \n", + "431.0 | \n", + "6.0 | \n", + "Reticulocyte | \n", + "s3d7 | \n", + "0.938854 | \n", + "0.942716 | \n", + "site3_donor7_cite | \n", + "site3 | \n", + "donor7 | \n", + "cite | \n", + "3054734 | \n", + "11466 | \n", + "22 | \n", + "31.5 | \n", + "A+ | \n", + "Asian | \n", + "NOT HISPANIC OR LATINO | \n", + "Female | \n", + "True | \n", + "Nonsmoker | \n", + "train | \n", + "Erythroid Lineage | \n", + "
| ATCACAGTCGCCAACG-1-s3d7 | \n", + "822 | \n", + "7.060850 | \n", + "0.409965 | \n", + "G1 | \n", + "120 | \n", + "915.0 | \n", + "9.0 | \n", + "CD14+ Mono | \n", + "s3d7 | \n", + "NaN | \n", + "NaN | \n", + "site3_donor7_cite | \n", + "site3 | \n", + "donor7 | \n", + "cite | \n", + "3054734 | \n", + "11466 | \n", + "22 | \n", + "31.5 | \n", + "A+ | \n", + "Asian | \n", + "NOT HISPANIC OR LATINO | \n", + "Female | \n", + "True | \n", + "Nonsmoker | \n", + "train | \n", + "Monocytes | \n", + "
| TTATTGCAGGTAGCCA-1-s3d7 | \n", + "1676 | \n", + "7.342048 | \n", + "1.075299 | \n", + "G2M | \n", + "114 | \n", + "593.0 | \n", + "4.0 | \n", + "CD14+ Mono | \n", + "s3d7 | \n", + "NaN | \n", + "NaN | \n", + "site3_donor7_cite | \n", + "site3 | \n", + "donor7 | \n", + "cite | \n", + "3054734 | \n", + "11466 | \n", + "22 | \n", + "31.5 | \n", + "A+ | \n", + "Asian | \n", + "NOT HISPANIC OR LATINO | \n", + "Female | \n", + "True | \n", + "Nonsmoker | \n", + "train | \n", + "Monocytes | \n", + "
66175 rows × 27 columns
\n", + "| \n", + " | GEX_n_genes_by_counts | \n", + "GEX_pct_counts_mt | \n", + "GEX_size_factors | \n", + "GEX_phase | \n", + "ADT_n_antibodies_by_counts | \n", + "ADT_total_counts | \n", + "ADT_iso_count | \n", + "cell_type | \n", + "batch | \n", + "ADT_pseudotime_order | \n", + "GEX_pseudotime_order | \n", + "Samplename | \n", + "Site | \n", + "DonorNumber | \n", + "Modality | \n", + "VendorLot | \n", + "DonorID | \n", + "DonorAge | \n", + "DonorBMI | \n", + "DonorBloodType | \n", + "DonorRace | \n", + "Ethnicity | \n", + "DonorGender | \n", + "QCMeds | \n", + "DonorSmoker | \n", + "is_train | \n", + "second_hierarchy | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| TCAAGCACACCGGCTA-1-s1d1 | \n", + "2119 | \n", + "6.017303 | \n", + "1.172258 | \n", + "G2M | \n", + "127 | \n", + "5362.0 | \n", + "9.0 | \n", + "CD4+ T activated integrinB7+ | \n", + "s1d1 | \n", + "NaN | \n", + "NaN | \n", + "site1_donor1_cite | \n", + "site1 | \n", + "donor1 | \n", + "cite | \n", + "3054455 | \n", + "15078 | \n", + "34 | \n", + "24.8 | \n", + "B- | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "train | \n", + "T Cells | \n", + "
| ACGTACAGTGAGAGGG-1-s2d5 | \n", + "1846 | \n", + "5.953992 | \n", + "1.519687 | \n", + "G2M | \n", + "118 | \n", + "1417.0 | \n", + "5.0 | \n", + "CD14+ Mono | \n", + "s2d5 | \n", + "NaN | \n", + "NaN | \n", + "site2_donor5_cite | \n", + "site2 | \n", + "donor5 | \n", + "cite | \n", + "3054457 | \n", + "16710 | \n", + "40 | \n", + "27.8 | \n", + "O+ | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Female | \n", + "False | \n", + "Smoker | \n", + "train | \n", + "Monocytes | \n", + "
| TACAACGCATAGCACT-1-s3d1 | \n", + "1524 | \n", + "11.220431 | \n", + "2.931581 | \n", + "S | \n", + "133 | \n", + "2966.0 | \n", + "32.0 | \n", + "Proerythroblast | \n", + "s3d1 | \n", + "0.973489 | \n", + "0.874869 | \n", + "site3_donor1_cite | \n", + "site3 | \n", + "donor1 | \n", + "cite | \n", + "3054455 | \n", + "15078 | \n", + "34 | \n", + "24.8 | \n", + "B- | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "train | \n", + "Erythroid Lineage | \n", + "
| GTAATGCCACAGCATT-1-s3d6 | \n", + "986 | \n", + "3.954438 | \n", + "0.460756 | \n", + "S | \n", + "106 | \n", + "1087.0 | \n", + "8.0 | \n", + "Erythroblast | \n", + "s3d6 | \n", + "0.909934 | \n", + "0.809380 | \n", + "site3_donor6_cite | \n", + "site3 | \n", + "donor6 | \n", + "cite | \n", + "3059371 | \n", + "28045 | \n", + "36 | \n", + "23.8 | \n", + "A+ | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Female | \n", + "False | \n", + "Nonsmoker | \n", + "train | \n", + "Erythroid Lineage | \n", + "
| TCGATTTGTGTTGATC-1-s3d6 | \n", + "1233 | \n", + "4.216867 | \n", + "0.675681 | \n", + "G2M | \n", + "100 | \n", + "415.0 | \n", + "4.0 | \n", + "CD16+ Mono | \n", + "s3d6 | \n", + "NaN | \n", + "NaN | \n", + "site3_donor6_cite | \n", + "site3 | \n", + "donor6 | \n", + "cite | \n", + "3059371 | \n", + "28045 | \n", + "36 | \n", + "23.8 | \n", + "A+ | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Female | \n", + "False | \n", + "Nonsmoker | \n", + "train | \n", + "Monocytes | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| GATTCTTTCATTGTTC-1-s3d6 | \n", + "798 | \n", + "6.737401 | \n", + "0.353780 | \n", + "G2M | \n", + "100 | \n", + "363.0 | \n", + "3.0 | \n", + "CD8+ T naive | \n", + "s3d6 | \n", + "NaN | \n", + "NaN | \n", + "site3_donor6_cite | \n", + "site3 | \n", + "donor6 | \n", + "cite | \n", + "3059371 | \n", + "28045 | \n", + "36 | \n", + "23.8 | \n", + "A+ | \n", + "Other Race | \n", + "HISPANIC OR LATINO | \n", + "Female | \n", + "False | \n", + "Nonsmoker | \n", + "train | \n", + "T Cells | \n", + "
| GTCGCGACAGTTCCAA-1-s3d1 | \n", + "357 | \n", + "1.405152 | \n", + "0.408550 | \n", + "S | \n", + "129 | \n", + "1590.0 | \n", + "25.0 | \n", + "Erythroblast | \n", + "s3d1 | \n", + "0.967875 | \n", + "0.929695 | \n", + "site3_donor1_cite | \n", + "site3 | \n", + "donor1 | \n", + "cite | \n", + "3054455 | \n", + "15078 | \n", + "34 | \n", + "24.8 | \n", + "B- | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "train | \n", + "Erythroid Lineage | \n", + "
| TACGTCCTCCCTTGTG-1-s2d1 | \n", + "1297 | \n", + "7.581700 | \n", + "1.040512 | \n", + "G1 | \n", + "115 | \n", + "1199.0 | \n", + "5.0 | \n", + "CD14+ Mono | \n", + "s2d1 | \n", + "NaN | \n", + "NaN | \n", + "site2_donor1_cite | \n", + "site2 | \n", + "donor1 | \n", + "cite | \n", + "3054455 | \n", + "15078 | \n", + "34 | \n", + "24.8 | \n", + "B- | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "train | \n", + "Monocytes | \n", + "
| TCTCAGCAGGATGAGA-1-s3d1 | \n", + "877 | \n", + "4.774381 | \n", + "1.349673 | \n", + "G2M | \n", + "133 | \n", + "3342.0 | \n", + "22.0 | \n", + "Plasma cell IGKC+ | \n", + "s3d1 | \n", + "NaN | \n", + "NaN | \n", + "site3_donor1_cite | \n", + "site3 | \n", + "donor1 | \n", + "cite | \n", + "3054455 | \n", + "15078 | \n", + "34 | \n", + "24.8 | \n", + "B- | \n", + "White | \n", + "HISPANIC OR LATINO | \n", + "Male | \n", + "False | \n", + "Nonsmoker | \n", + "train | \n", + "Plasma Cells | \n", + "
| TTTCAGTGTTCATCTT-1-s3d7 | \n", + "1511 | \n", + "4.271632 | \n", + "0.938302 | \n", + "G2M | \n", + "105 | \n", + "638.0 | \n", + "3.0 | \n", + "CD14+ Mono | \n", + "s3d7 | \n", + "NaN | \n", + "NaN | \n", + "site3_donor7_cite | \n", + "site3 | \n", + "donor7 | \n", + "cite | \n", + "3054734 | \n", + "11466 | \n", + "22 | \n", + "31.5 | \n", + "A+ | \n", + "Asian | \n", + "NOT HISPANIC OR LATINO | \n", + "Female | \n", + "True | \n", + "Nonsmoker | \n", + "train | \n", + "Monocytes | \n", + "
66175 rows × 27 columns
\n", + "