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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<link rel="shortcut icon" type="image/x-icon" href="favicon/favicon.ico" />
<!-- Touch Icons - iOS and Android 2.1+ 152x152 pixels in size. -->
<link rel="apple-touch-icon" type="image/png" , href="favicon/apple-touch-icon.png">
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<!-- see https://mobiforge.com/design-development/adding-favicons-in-a-multi-browser-multi-platform-world -->
<link rel="icon" type="image/png" href="favicon/icon_fullsize.png">
<link rel="icon" type="image/png" sizes="16x16" href="favicon/icon48.png">
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<link rel="stylesheet" href="reset.css">
<link rel="stylesheet" href="fonts.css">
<link rel="stylesheet" href="style.css">
<link rel="stylesheet" href="style_screen.css">
<link rel="stylesheet" href="style_print.css">
<link rel="stylesheet" href="style_handheld.css">
<title>Resume - Derek Berger</title>
</head>
<body class="all-content">
<!-- <div class="backdrop"></div> -->
<input type="checkbox" name="clicker" id="clicker">
<div class="sidebar">
<section class="contact section">
<h1>Contact</h1>
<p>[obfuscated]@[someservice].com</p>
<p>XXX-XXX-XXXX</p>
<p>Townsville, ON</p>
</section>
<section class="section">
<h1>Programming Skills</h1>
<ul>
<li>
<p>Javascript, TypeScript</p>
</li>
<li>
<p>Git, shell, command-line, zsh, bash, shell-scripting, vim, test-driven development</p>
</li>
<li>
<p>Python: STL, Sphinx, ReST, pyenv, virtualenv, venv, Poetry, multiprocessing</p>
</li>
<li>
<p>Scientific Python: NumPy, scikit-learn, scipy, Numba, skimage, statsmodels,
Matplotlib, Seaborn </p>
</li>
<!-- - WANT TO ADD ASYNC/AWAIT to above -->
</ul>
</section>
<section class="section">
<h1>Web Development</h1>
<p>
Typescript React, Typescript Vue, React router, Redux
Vue/React: single file components with Pug, Stylus,
Jest, MySQL (basic competence)
HTML Templating, Pug, Handlebars,
CSS, Stylus, SASS, CleanCSS, responsive design, adaptive design
</p>
<ul>
</ul>
</section>
<section class="section">
<h1>Systems</h1>
<ul>
<li>
<p>Rust: clap, iron, standard library, cargo, clippy</p>
</li>
<li>
<p>C: standard library</p>
</li>
<!-- - want to add Ray, Actix/Web or w/e, -->
</ul>
</section>
<section class="section">
<h1>Data Science</h1>
<section class="subsection">
<h2>Scientific Python</h2>
<ul>
<li>
<p>NumPy, scikit-learn, scipy, Numba, skimage, statsmodels</p>
</li>
<li>
<p>Matplotlib, Seaborn</p>
</li>
<li>
<p>R</p>
</li>
</ul>
</section>
</section>
<section class="section">
<section class="subsection">
<h2>Deep Learning</h2>
<ul>
<li>
<p>PyTorch, PyTorch Lightning, torchmetrics, Tensorflow, Tensorboard, Keras, Optuna, Ray[tune]</p>
</li>
<li>
<p>custom: losses, callbacks, layers, dataloaders</p>
</li>
<li>
<p>SLURM HPC</p>
</li>
</ul>
</section>
</section>
<section class="section">
<section class="subsection">
<h2>Academic</h2>
<ul>
<li>
<p>LaTeX, BibTeX, RMarkdown, Bookdown, Zotero</p>
</li>
<li>
<p>Robust statistics, classical machine learning, </p>
<p>psychometrics (Item Response Theory, Classical Test Theory)</p>
</li>
<!-- Bayesian modeling ? -->
</ul>
</section>
</section>
</div> <!-- class=sidebar -->
<div class="pages">
<div class="header">
<p class="name">Derek Berger</p>
<p class="email">[obfuscated]@[someservice].com</p>
</div>
<div class="page">
<div class="main-content">
<section class="section">
<h1> Education and Academics (2010-2015)</h1>
<ul>
<li>
<p>Nihon University: Tokyo, Japan (2010)</p>
</li>
<li>
<p>H. BSc. Specialist in Psychology, University of Toronto (2015)</p>
</li>
<li>
<p>Research Assistant and TA St. Francis Xavier University (2019-2022)</p>
</li>
</ul>
</section>
<section class="section">
<h1> Research and Self-Education (2015-2018) </h1>
<ul>
<li>
<p>Computer Engineering and Software Development</p>
</li>
<li>
<p>Statistical modeling of reproducibility and replicability issues in science</p>
</li>
<ul>
<li>
<p>LeBel, E. P., Berger, D., Campbell, L., & Loving, T. J. (2017). Falsifiability is not optional.
</p>
</li>
</ul>
</ul>
</section>
<section class="section">
<h1>TA and Research Assistant St. Francis Xavier University (2019-2022)</h1>
<ul>
<!-- ML/AI -->
<li>
<p>Machine learning and deep learning / AI with biomedical data (MRI, fMRI)</p>
</li>
<ul>
<li>
<p>custom feature extraction and data loading for deep learning / AI pipelines</p>
</li>
<li>
<p>custom architecture designs (GAN, classifiers) for 4D (3D video) data </p>
</li>
<li>
<p>data munging/wrangling with real-world messy data (medical imaging, clinical records)</p>
</li>
</ul>
<!-- AutoML/AI -->
<li>
<p>AI / Machine / deep learning automation</p>
</li>
<ul>
<li>
<p>Evolutionary algorithms for neural architecture search / automated AI development (repo)</p>
</li>
<li>
<p>automated classifier benchmarking via classical machine-learning methods(repo)</p>
</li>
</ul>
<!-- RMT -->
<li>
<p>Random matrix theory for data analysis and feature extraction </p>
</li>
<ul>
<li>
<p>efficiently compute random matrix spectral statistics for large matrices</p>
</li>
</ul>
<li>
<p>Teaching and supervision</p>
</li>
<ul>
<li>
<p>supervised and guided 5-10 students per term</p>
</li>
<li>
<p>managed tutorials (video, in-person) and acted as substitute lecturer</p>
</li>
</ul>
</ul>
<section class="subsection">
<h2>Academic Projects and Repositories</h2>
<div class="repo named">
<p><code>empyricalRMT</code>: Python tools for Random Matrix Theory analyses</p>
<a href="https://github.com/stfxecutables/empyricalRMT">github.com/stfxecutables/empyricalRMT</a>
</div>
<div class="repo named">
<p><code>error-consistency</code>: analysis of classifier error behaviour</p>
<a
href="https://github.com/stfxecutables/error-consistency">github.com/stfxecutables/error-consistency</a>
</div>
<div class="repo named">
<p><code>df-analyze</code>: automated classification benchmarking of tabular data</p>
<a href="https://github.com/stfxecutables/df-analyze">https://github.com/stfxecutables/df-analyze</a>
</div>
<div class="repo named">
<p>Automated neural network architecture design via evolutionary algorithms:</p>
<a href="https://github.com/stfxecutables/FANG">github.com/stfxecutables/FANG</a>
</div>
<div class="repo">
<p>Feature extraction and analysis for functional magnetic resonance images:</p>
<a href="https://github.com/stfxecutables/ABIDE-eig">github.com/stfxecutables/ABIDE-eig</a>
</div>
<div class="repo">
<p>Investigation of misclassification behaviour in COVID CT scans, Alzheimer's MRI</p>
<a href="https://github.com/stfxecutables/ec-analyses-2021">github.com/stfxecutables/ec-analyses-2021</a>
</div>
</section> <!-- Projects subsection -->
<section class="publications subsection">
<h2>Publications</h2>
<div class="citation">
<div class="authors">
<p>Berger, D., Matharoo, G. S., & Levman, J.</p>
</div>
<div class="year">(2021)</div>
<div class="title">
<p>Open Source Random Matrix Theory Software for the Analysis of Functional
Magnetic-Resonance Imaging Examinations.</p>
</div>
<div class="journal">
<p>ISMRM & SMRT Annual Meeting & Exhibition, Vancouver, BC, Canada.</p>
</div>
</div>
<div class="citation">
<div class="authors">
<p>Wang, J., Berger, D., Mattie, D., & Levman, J. </p>
</div>
<div class="year">(2021)</div>
<div class="title">
<p>Multichannel input pixelwise regression 3D U-Nets for medical image estimation with
3 applications in brain MRI.</p>
</div>
<div class="journal">
<p>OpenReview</p>
</div>
<div class="link">
<p><a href="https://openreview.net/forum?id=JG895xlWsfA">openreview.net/forum?id=JG895xlWsfA</a>
</p>
</div>
</div>
<div class="citation">
<div class="authors">
<p>Levman, J., Jennings, M., Kabaria, P., Rouse, E., Nangaku, M., Berger, D.,
Gondra, I., Takahashi, E., & Tyrrell, P.</p>
</div>
<div class="year">(2021)</div>
<div class="title">
<p>Hold-out validation for the assessment of stability and reliability of
multivariable regression demonstrated with magnetic resonance imaging of patients with
schizophrenia.</p>
</div>
<div class="journal">
<p>International Journal of Developmental Neuroscience, 81(7).</p>
</div>
<div class="link"><a href="https://onlinelibrary.wiley.com/doi/10.1002/jdn.10144">
<p>10.1002/jdn.10144</p>
</a>
</div>
</div>
<div class="citation">
<div class="authors">
<p>Sughimoto, K., Levman, J., Baig, F., Berger, D., Oshima, Y., Kurosawa, H., Aoki,
K., Seino, Y., Ueda, T., Liu, H., & Miyaji, K.</p>
</div>
<div class="year">(2020)</div>
<div class="title">
<p>Abstract 14955: Machine Learning Predicts Hemodynamic Instability in Children After
Cardiac Surgery in Pediatric Intensive Care Unit (PICU).</p>
</div>
<div class="journal">
<p>Circulation, 142(Suppl_3).</p>
</div>
<div class="link"><a href="https://doi.org/10.1161/circ.142.suppl_3.14955">
<p>10.1161/circ.142.suppl_3.14955</p>
</a></div>
</div>
</section>
</section>
</div>
</div>
<div class="page">
<section class="section">
<h1>Personal Projects and Repos (<a href="https://bitbucket.org/DM-Berger/">bitbucket.org/DM-Berger/</a>)</h1>
<div class="repo named">
<p><code>recodify</code>: unified code syntax highlighting and styles across the web</p>
<a href="https://bitbucket.org/DM-Berger/recodify/src/master/">bitbucket.org/DM-Berger/recodify</a>
</div>
<div class="repo named">
<p><code>ttymer</code>: CLI visual timer application </p>
<a href="https://bitbucket.org/DM-Berger/ttymer/src/master/">bitbucket.org/DM-Berger/ttymer</a>
</div>
<ul>
<li>
<p></p>
</li>
<li>
<p>Rust CLI apps</p>
</li>
<li>
<p>cfviz frontend</p>
</li>
<li>
<p>C miniature unit-testing library</p>
</li>
<li>
<p>multi-process</p>
</li>
</ul>
</section>
<section class="section">
<h1>References</h1>
<ul>
<li>
<p>Professor Jacob Levman - Canada Research Chair and Assistant Professor</p>
</li>
<ul>
<li>
<p>St. Francis Xavier University, [email], [phone]</p>
</li>
</ul>
</ul>
</section>
<section class="section about">
<h1>About This Resume (Resize me!)</h1>
<p>I have made some efforts to make the this resume both responsive and adaptive, and to
render well on Chrome and Firefox on both Linux and MacOS, and even on my ancient iPhone 5S.
Content is also semantically organized into pages, so a print preview (with margins set to
None and scale set to 100%) also yields a tidy pdf version (on Chrome - Firefox pdf printing <a
href="https://bugzilla.mozilla.org/show_bug.cgi?id=1739432">is currently bugged</a>). Try
out resizing and the print
view! </p>
</section>
</div>
</div> <!-- class="sections" -->
<!-- </div> pages -->
<label class="sidebar-toggle" for="clicker">></label>
<!-- </div> clicker -->
</body>
</html>