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L2_task-all_model-01_type-nppi.sh
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executable file
·132 lines (123 loc) · 4.39 KB
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#!/usr/bin/env bash
maindir=`pwd`
sub=$1
nruns=$2
ppi=$3
sm=6
MAINOUTPUT=${maindir}/fsl/sub-${sub}
#
## Trust Task
#NCOPES=19
#INPUT1=${MAINOUTPUT}/L1_task-trust_model-01_type-ppi_seed-${ppi}_run-01_sm-${sm}.feat
#INPUT2=${MAINOUTPUT}/L1_task-trust_model-01_type-ppi_seed-${ppi}_run-02_sm-${sm}.feat
#INPUT3=${MAINOUTPUT}/L1_task-trust_model-01_type-ppi_seed-${ppi}_run-03_sm-${sm}.feat
#INPUT4=${MAINOUTPUT}/L1_task-trust_model-01_type-ppi_seed-${ppi}_run-04_sm-${sm}.feat
#INPUT5=${MAINOUTPUT}/L1_task-trust_model-01_type-ppi_seed-${ppi}_run-05_sm-${sm}.feat
#
#
#OUTPUT=${MAINOUTPUT}/L2_task-trust_model-01_type-ppi_seed-${ppi}_sm-${sm}
#if [ -e ${OUTPUT}.gfeat/cope${NCOPES}.feat/cluster_mask_zstat1.nii.gz ]; then
# echo "skipping existing output"
#else
# rm -rf ${OUTPUT}.gfeat
#
# ITEMPLATE=${maindir}/templates/L2_task-trust_model-01_type-ppi_nruns-${nruns}.fsf
# OTEMPLATE=${MAINOUTPUT}/L2_task-trust_model-01_type-ppi_seed-${ppi}.fsf
#
# if [ ${nruns} -eq 5 ]; then
# sed -e 's@OUTPUT@'$OUTPUT'@g' \
# -e 's@INPUT1@'$INPUT1'@g' \
# -e 's@INPUT2@'$INPUT2'@g' \
# -e 's@INPUT3@'$INPUT3'@g' \
# -e 's@INPUT4@'$INPUT4'@g' \
# -e 's@INPUT5@'$INPUT5'@g' \
# <$ITEMPLATE> $OTEMPLATE
# elif [ ${nruns} -eq 4 ]; then
# sed -e 's@OUTPUT@'$OUTPUT'@g' \
# -e 's@INPUT1@'$INPUT1'@g' \
# -e 's@INPUT2@'$INPUT2'@g' \
# -e 's@INPUT3@'$INPUT3'@g' \
# -e 's@INPUT4@'$INPUT4'@g' \
# <$ITEMPLATE> $OTEMPLATE
# elif [ ${nruns} -eq 3 ]; then
# sed -e 's@OUTPUT@'$OUTPUT'@g' \
# -e 's@INPUT1@'$INPUT1'@g' \
# -e 's@INPUT2@'$INPUT2'@g' \
# -e 's@INPUT3@'$INPUT3'@g' \
# <$ITEMPLATE> $OTEMPLATE
# elif [ ${nruns} -eq 2 ]; then
# sed -e 's@OUTPUT@'$OUTPUT'@g' \
# -e 's@INPUT1@'$INPUT1'@g' \
# -e 's@INPUT2@'$INPUT2'@g' \
# <$ITEMPLATE> $OTEMPLATE
# fi
# feat $OTEMPLATE
#
#
# # delete unused files
# for cope in `seq ${NCOPES}`; do
# rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/stats/res4d.nii.gz
# rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/stats/corrections.nii.gz
# rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/stats/threshac1.nii.gz
# rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/filtered_func_data.nii.gz
# rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/var_filtered_func_data.nii.gz
# done
#
#fi
#
#
## Shared Reward Task
#NCOPES=14
#INPUT1=${MAINOUTPUT}/L1_task-sharedreward_model-01_type-ppi_seed-${ppi}_run-01_sm-${sm}.feat
#INPUT2=${MAINOUTPUT}/L1_task-sharedreward_model-01_type-ppi_seed-${ppi}_run-02_sm-${sm}.feat
#
#OUTPUT=${MAINOUTPUT}/L2_task-sharedreward_model-01_type-ppi_seed-${ppi}_sm-${sm}
#if [ -e ${OUTPUT}.gfeat/cope${NCOPES}.feat/cluster_mask_zstat1.nii.gz ]; then
# echo "skipping existing output"
#else
# rm -rf ${OUTPUT}.gfeat
#
# ITEMPLATE=${maindir}/templates/L2_task-sharedreward_model-01_type-ppi.fsf
# OTEMPLATE=${MAINOUTPUT}/L2_task-sharedreward_model-01_type-ppi_seed-${ppi}.fsf
# sed -e 's@OUTPUT@'$OUTPUT'@g' \
# -e 's@INPUT1@'$INPUT1'@g' \
# -e 's@INPUT2@'$INPUT2'@g' \
# <$ITEMPLATE> $OTEMPLATE
# feat $OTEMPLATE
#
# # delete unused files
# for cope in `seq ${NCOPES}`; do
# rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/stats/res4d.nii.gz
# rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/stats/corrections.nii.gz
# rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/stats/threshac1.nii.gz
# rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/filtered_func_data.nii.gz
# rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/var_filtered_func_data.nii.gz
# done
#
#fi
# Ultimatum Game Task
NCOPES=13
INPUT1=${MAINOUTPUT}/L1_task-ultimatum_model-01_nppi-${ppi}_run-01_sm-${sm}.feat
INPUT2=${MAINOUTPUT}/L1_task-ultimatum_model-01_nppi-${ppi}_run-02_sm-${sm}.feat
OUTPUT=${MAINOUTPUT}/L2_task-ultimatum_model-01_type-nppi-${ppi}_sm-${sm}
if [ -e ${OUTPUT}.gfeat/cope${NCOPES}.feat/cluster_mask_zstat1.nii.gz ]; then
echo "skipping existing output"
else
echo "re-doing: ${OUTPUT}" >> re-runL2.log
rm -rf ${OUTPUT}.gfeat
ITEMPLATE=${maindir}/templates/L2_task-ultimatum_model-01_type-ppi.fsf
OTEMPLATE=${MAINOUTPUT}/L2_task-ultimatum_model-01_type-nppi-${ppi}.fsf
sed -e 's@OUTPUT@'$OUTPUT'@g' \
-e 's@INPUT1@'$INPUT1'@g' \
-e 's@INPUT2@'$INPUT2'@g' \
<$ITEMPLATE> $OTEMPLATE
feat $OTEMPLATE
# delete unused files
for cope in `seq ${NCOPES}`; do
rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/stats/res4d.nii.gz
rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/stats/corrections.nii.gz
rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/stats/threshac1.nii.gz
rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/filtered_func_data.nii.gz
rm -rf ${OUTPUT}.gfeat/cope${cope}.feat/var_filtered_func_data.nii.gz
done
fi