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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -88,9 +88,9 @@ It will be really useful to retrieve it from deepchain hub.
8888 - librairies
8989 - embeddings
9090 - datasets
91- - cuda
91+ - device
9292
93- If you want your app to benefit from deepchain' GPU, set cuda to "True " in tags. It will run on CPU by default.
93+ If you want your app to benefit from deepchain' GPU, set device to "gpu " in tags. It will run on "cpu" by default.
9494
9595### Special method in app
9696
Original file line number Diff line number Diff line change 11# Description
22This app is a base application that compute the loglikelihood (the probability that a protein is natural or not).
33
4- We use a bio-transformers with a ESM 'prot_bert' model as backend to make the computation of logits
4+ We use a bio-transformers with a 'protbert' model as backend to make the computation of logits
55
66# Tags
77Fill the tags.json file in this folder:
@@ -10,8 +10,8 @@ Fill the tags.json file in this folder:
1010- libraries: str -> libraries used for the app
1111- embeddings: str -> embedding model if used.
1212- datasets: str -> dataset name if used.
13- - cuda : [ ] : bool -> By default, the app are launch on CPU on deepchain, put cuda to "True " to benefit GPU
14- and accelerate the optimization process during score computation.
13+ - device : [ "cpu" ] : str -> By default, the app are launched on cpu on deepchain, put device to "gpu " to benefit GPU
14+ and accelerate the optimization process during score computation.
1515
1616
1717## libraries
@@ -25,5 +25,4 @@ Fill the tags.json file in this folder:
2525## embeddings
2626- ESM
2727
28- ## datasets
29-
28+ ## datasets
Original file line number Diff line number Diff line change 33 "libraries" : [],
44 "embeddings" : [],
55 "datasets" : [],
6- "cuda " : [
7- " False "
6+ "device " : [
7+ " cpu "
88 ]
99}
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