From cde5bfaa1994c005a58a1a9b9127a2f46a5e13e5 Mon Sep 17 00:00:00 2001 From: "J. Seth Strattan" Date: Mon, 23 Mar 2020 16:46:17 -0700 Subject: [PATCH] Added accessioning support for fragment length over-ride --- dnanexus/chip_workflow.py | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/dnanexus/chip_workflow.py b/dnanexus/chip_workflow.py index c2201de59..68744b5a6 100755 --- a/dnanexus/chip_workflow.py +++ b/dnanexus/chip_workflow.py @@ -748,7 +748,8 @@ def main(): 'gappedpeak_as': dxpy.dxlink(resolve_file(args.gappedpeak_as)), 'broadpeak_as': dxpy.dxlink(resolve_file(args.broadpeak_as)), 'genomesize': genomesize, - 'chrom_sizes': chrom_sizes + 'chrom_sizes': chrom_sizes, + 'fragment_length': args.fragment_length } # have to prune out any arguments with value None because DX will error @@ -783,7 +784,8 @@ def main(): 'as_file': dxpy.dxlink(resolve_file(args.narrowpeak_as)), 'idr_peaks': True, 'spp_version': args.spp_version, - 'spp_instance': args.spp_instance + 'spp_instance': args.spp_instance, + 'fragment_length': args.fragment_length } if chrom_sizes: peaks_stage_input_mapping.update({'chrom_sizes': chrom_sizes})