Parent
#45
What to build
Document the count observation model and count data loading for users adopting the feature in #48 and #47.
Update roxygen for run_mcmc (observation_model argument, when to use "counts", relationship to eps_pos / eps_neg). Update roxygen for load_long_form_data and load_delimited_data (aggregate, reads column). Briefly explain that transmission and latent genotype support-set semantics are unchanged; counts inform the observation layer only.
Add a NEWS.md entry describing the new observation model, loading options, and that defaults remain binary for backward compatibility.
Acceptance criteria
Blocked by
Parent
#45
What to build
Document the count observation model and count data loading for users adopting the feature in #48 and #47.
Update roxygen for
run_mcmc(observation_modelargument, when to use"counts", relationship toeps_pos/eps_neg). Update roxygen forload_long_form_dataandload_delimited_data(aggregate,readscolumn). Briefly explain that transmission and latent genotype support-set semantics are unchanged; counts inform the observation layer only.Add a
NEWS.mdentry describing the new observation model, loading options, and that defaults remain binary for backward compatibility.Acceptance criteria
run_mcmcroxygen documentsobservation_modeland parameter mapping for count modeload_long_form_data/load_delimited_dataroxygen documentsaggregateandreadsNEWS.mdentry added for count observation model featureBlocked by