sarpyx/Singularity.def at main · ESA-PhiLab/sarpyx · GitHub

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Bootstrap: docker
From: ubuntu:22.04
Stage: builder

%files
    support/snap-install.sh /tmp/snap-install.sh
    support/snap.varfile /tmp/snap.varfile
    pyproject.toml /workspace/pyproject.toml
    sarpyx /workspace/sarpyx

%post
    #!/bin/bash
    set -eu

    echo 'APT::Sandbox::User "root";' > /etc/apt/apt.conf.d/99root

    export DEBIAN_FRONTEND=noninteractive
    export TZ=Etc/UTC

    export JAVA_HOME="/usr/lib/jvm/java-8-openjdk-amd64"
    export SNAP_VERSION=12.0.0
    export SNAP_HOME="/snap12"
    export SNAP_SKIP_UPDATES=1
    export PATH="${PATH}:${SNAP_HOME}/bin"

    export PIP_DISABLE_PIP_VERSION_CHECK=1
    export PIP_NO_CACHE_DIR=1

    apt-get update && apt-get install -y --no-install-recommends \
        ca-certificates \
        software-properties-common \
        gnupg \
        gpg-agent \
        lsb-release \
        && add-apt-repository -y ppa:deadsnakes/ppa \
        && add-apt-repository -y ppa:openjdk-r/ppa \
        && apt-get update && apt-get install -y --no-install-recommends \
        python3.11 \
        python3.11-venv \
        python3.11-dev \
        curl \
        wget \
        git \
        build-essential \
        openjdk-8-jdk \
        libhdf5-dev \
        libxml2-dev \
        libxslt1-dev \
        libproj-dev \
        libgeos-dev \
        && rm -rf /var/lib/apt/lists/*

    sed -i "s|^sys.installationDir=.*|sys.installationDir=${SNAP_HOME}|" /tmp/snap.varfile
    chmod +x /tmp/snap-install.sh
    /tmp/snap-install.sh -v
    rm -f /tmp/snap-install.sh /tmp/snap.varfile
    rm -rf /var/lib/apt/lists/*

    curl -fsSL https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py
    python3.11 /tmp/get-pip.py
    rm -f /tmp/get-pip.py

    cd /workspace
    python3.11 -m pip install --no-cache-dir .
    python3.11 -c "import sarpyx; print('sarpyx installed successfully')"

Bootstrap: docker
From: ubuntu:22.04
Stage: runtime

%labels
    Author yourname
    Description SNAP + sarpyx runtime container

%environment
    export DEBIAN_FRONTEND=noninteractive
    export TZ=Etc/UTC
    export LANG=en_US.UTF-8
    export LANGUAGE=en_US:en
    export LC_ALL=en_US.UTF-8
    export JAVA_HOME="/usr/lib/jvm/java-8-openjdk-amd64"
    export SNAP_HOME="/workspace/snap12"
    export SNAP_SKIP_UPDATES=1
    export PATH="${PATH}:${SNAP_HOME}/bin"
    export PIP_DISABLE_PIP_VERSION_CHECK=1
    export PIP_NO_CACHE_DIR=1

%files from builder
    /snap12 /workspace/snap12

%files
    pyproject.toml /workspace/pyproject.toml
    sarpyx /workspace/sarpyx
    tests /workspace/tests
    entrypoint.sh /usr/local/bin/entrypoint.sh
    start-jupyter.sh /usr/local/bin/start-jupyter.sh

%post
    #!/bin/bash
    set -eu

    echo 'APT::Sandbox::User "root";' > /etc/apt/apt.conf.d/99root

    export DEBIAN_FRONTEND=noninteractive
    export TZ=Etc/UTC
    export LANG=en_US.UTF-8
    export LANGUAGE=en_US:en
    export LC_ALL=en_US.UTF-8

    export JAVA_HOME="/usr/lib/jvm/java-8-openjdk-amd64"
    export SNAP_HOME="/workspace/snap12"
    export SNAP_SKIP_UPDATES=1
    export PATH="${PATH}:${SNAP_HOME}/bin"

    export PIP_DISABLE_PIP_VERSION_CHECK=1
    export PIP_NO_CACHE_DIR=1

    apt-get update && apt-get install -y --no-install-recommends \
        ca-certificates \
        python3.11 \
        curl \
        locales \
        openjdk-8-jdk \
        gdal-bin \
        libgdal30 \
        && locale-gen en_US.UTF-8 \
        && update-locale LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 \
        && rm -rf /var/lib/apt/lists/* \
        && apt-get clean \
        && rm -rf /tmp/* /var/tmp/*

    ln -sf /usr/bin/python3.11 /usr/bin/python3
    ln -sf /usr/bin/python3.11 /usr/bin/python

    curl -fsSL https://bootstrap.pypa.io/get-pip.py -o /tmp/get-pip.py
    python3.11 /tmp/get-pip.py
    rm -f /tmp/get-pip.py

    ln -sf /workspace/snap12/bin/snap /usr/local/bin/snap
    ln -sf /workspace/snap12/bin/gpt /usr/local/bin/gpt

    cd /workspace
    python3.11 -m pip install --upgrade pip setuptools wheel
    python3.11 -m pip install -e .
    python3.11 -c "import six; print('six installed successfully')"
    python3.11 -m pip install --ignore-installed --no-cache-dir six python-dateutil
    python3.11 -c "import six, dateutil; print('runtime deps ok')"
    rm -rf /var/lib/apt/lists/* /var/cache/apt/* /tmp/* /var/tmp/*

    chmod +x /usr/local/bin/entrypoint.sh /usr/local/bin/start-jupyter.sh

%runscript
    cd /workspace
    if [ "$#" -eq 0 ]; then
        exec /usr/local/bin/entrypoint.sh /bin/bash
    else
        exec /usr/local/bin/entrypoint.sh "$@"
    fi

%startscript
    cd /workspace
    if [ "$#" -eq 0 ]; then
        exec /usr/local/bin/entrypoint.sh /bin/bash
    else
        exec /usr/local/bin/entrypoint.sh "$@"
    fi

%test
    python3.11 -c "import sarpyx; print('sarpyx OK')"