-
Notifications
You must be signed in to change notification settings - Fork 1
Expand file tree
/
Copy pathsubmit_to_portal.sh
More file actions
executable file
·27 lines (19 loc) · 2.29 KB
/
Copy pathsubmit_to_portal.sh
File metadata and controls
executable file
·27 lines (19 loc) · 2.29 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
#!/bin/bash
set -e
# # submit annotation objects
# eu_register.py -m prod -p annotation -i /oak/stanford/groups/engreitz/Users/atan5133/encode_dataset_processing/encode_portal_submission/results/dhs_only/annotation.tsv
# # submit full prediction files
# eu_register.py -m prod -p file -i /oak/stanford/groups/engreitz/Users/atan5133/encode_dataset_processing/encode_portal_submission/results/dhs_only/meta_file_full_predictions.tsv
# # submit thresholded prediction files
# eu_register.py -m prod -p file -i /oak/stanford/groups/engreitz/Users/atan5133/encode_dataset_processing/encode_portal_submission/results/dhs_only/meta_file_thresholded_predictions.tsv
# # submit all thresholded bedpe files
# eu_register.py -m prod -p file -i /oak/stanford/groups/engreitz/Users/atan5133/encode_dataset_processing/encode_portal_submission/results/dhs_only/meta_file_thresholded_bedpe.tsv
# # submit all thresholded bigInteract files
# eu_register.py -m prod -p file -i /oak/stanford/groups/engreitz/Users/atan5133/encode_dataset_processing/encode_portal_submission/results/dhs_only/meta_file_thresholded_bigInteract.tsv
# # submit all candidate element files
# eu_register.py -m prod -p file -i /oak/stanford/groups/engreitz/Users/atan5133/encode_dataset_processing/encode_portal_submission/results/dhs_only/meta_file_candidate_elements.tsv
# eu_register.py -m prod -p file -i /oak/stanford/groups/engreitz/Users/atan5133/encode_dataset_processing/encode_portal_submission/results/dhs_only/patches/meta_file_full_predictions.tsv --patch
# eu_register.py -m prod -p file -i /oak/stanford/groups/engreitz/Users/atan5133/encode_dataset_processing/encode_portal_submission/results/dhs_only/patches/meta_file_thresholded_predictions.tsv --patch
# eu_register.py -m prod -p file -i /oak/stanford/groups/engreitz/Users/atan5133/encode_dataset_processing/encode_portal_submission/results/dhs_only/patches/meta_file_thresholded_bedpe.tsv --patch
# eu_register.py -m prod -p file -i /oak/stanford/groups/engreitz/Users/atan5133/encode_dataset_processing/encode_portal_submission/results/dhs_only/patches/meta_file_thresholded_bigInteract.tsv --patch
# eu_register.py -m prod -p file -i /oak/stanford/groups/engreitz/Users/atan5133/encode_dataset_processing/encode_portal_submission/results/dhs_only/patches/meta_file_candidate_elements.tsv --patch