Shared R & Python utilities for the Engreitz Lab — handy tools for single-cell, CRISPR/TAP-seq, analysis workflows, plotting, QC, and I/O.
Reusable, lab-tested bits and pieces — so we don’t keep rewriting the same code.
- Single-cell helpers: Seurat/Scanpy glue, metadata joins, plotting themes
- CRISPR/TAP-seq utils: primer checks, guide labeling, efficiency summaries
- I/O & munging: fast readers/writers, Google Cloud helpers, schema checks
- Plotting: consistent themes, palettes, small multiples for QC
- Repro: tiny test datasets and deterministic examples
(Add/remove as the repo evolves.)