Hello,
I have generated all the required files and now want to calculate the TPM values of my metagenomic samples. When I run the script, it does produce the output file but it contains ONLY ONE column with gene ids that's it. The output file doesn't contain the second column with TPM values. Here is my script.
tpm_table.py -n A_case -c A_case.count -i <(echo -e "A_case\t100") -l A_case.genelengths > A_case.tpm
Please help me to identify if I made any mistake? Thanks
Hello,
I have generated all the required files and now want to calculate the TPM values of my metagenomic samples. When I run the script, it does produce the output file but it contains ONLY ONE column with gene ids that's it. The output file doesn't contain the second column with TPM values. Here is my script.
tpm_table.py -n A_case -c A_case.count -i <(echo -e "A_case\t100") -l A_case.genelengths > A_case.tpmPlease help me to identify if I made any mistake? Thanks