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---
---
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="description" content="G4 database">
<meta name="author" content="Eric Largy">
<title>G4 database</title>
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{% include head-css.html %}
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<a class="nav-link js-scroll-trigger" href="#download">database</a>
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<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="#features">features</a>
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<a class="nav-link js-scroll-trigger" href="#cta">help</a>
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<a class="nav-link js-scroll-trigger" href="bib.html" target="_blank">publications</a>
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portfolio
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<div class="container h-100">
<div class="row h-100">
<div class="col-lg-7 my-auto">
<div class="header-content mx-auto">
<h1 class="mb-5">A database of validated DNA G-quadruplexes structures in native mass spectrometry conditions.
<a class=" js-scroll-trigger" href="#download">
Explore it.
</a></h1>
<a href="https://academic.oup.com/nar/article/49/4/2333/6130851" target="_blank" class="btn btn-outline btn-xl-prime js-scroll-trigger">Read the publication in Nucleic Acids Research</a>
<br><br>
<a href="https://github.com/EricLarG4/g4dbr/blob/master/inst/extdata/full_database.Rda?raw=true" target="_blank" class="btn btn-outline btn-xl js-scroll-trigger">Download the database (.Rda)</a>
<br>
<br><br>
<h2 class="mb-5">The database was generated and can be consulted with the R package <span style="color: #189dd9"><b>g4db</b></span><span style="color: #46372d"><b>r</b></span>.
<a class=" js-scroll-trigger" href="#features">
Learn more.
</a></h2>
<a href="https://github.com/EricLarG4/g4dbr" target="_blank" class="btn btn-outline btn-xl js-scroll-trigger">Get g4dbr</a>
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</header>
<section class="download bg-primary text-center" id="download">
<div class="container">
<div class="row">
<div class="col-md-16 mx-auto">
<h2 class="section-heading">G-quadruplex database</h2>
<h1 class="section-heading">Quick access for PDB pros!</h1>
<p>Click on a pdb id to open the data (HTML)</p>
<div class="quickpdb">
<ul>
<li><a href="SI/g4db report - 22AG.html" target="_blank">22AG</a></li>
<li><a href="SI/g4db report - 1XAV.html" target="_blank">1XAV</a></li>
<li><a href="SI/g4db report - 2GKU.html" target="_blank">2GKU</a></li>
<li><a href="SI/g4db report - 2HY9.html" target="_blank">2HY9</a></li>
<li><a href="SI/g4db report - 2JPZ.html" target="_blank">2JPZ</a></li>
<li><a href="SI/g4db report - 2JSM.html" target="_blank">2JSM</a></li>
<li><a href="SI/g4db report - 2KF8.html" target="_blank">2KF8</a></li>
<li><a href="SI/g4db report - 2KM3.html" target="_blank">2KM3</a></li>
<li><a href="SI/g4db report - 2KPR.html" target="_blank">2KPR</a></li>
<li><a href="SI/g4db report - 2KYP.html" target="_blank">2KYP</a></li>
<li><a href="SI/g4db report - 2LBY.html" target="_blank">2LBY</a></li>
<li><a href="SI/g4db report - 2LEE.html" target="_blank">2LEE</a></li>
<li><a href="SI/g4db report - 2LK7.html" target="_blank">2LK7</a></li>
<li><a href="SI/g4db report - 2LOD.html" target="_blank">2LOD</a></li>
<li><a href="SI/g4db report - 2LPW.html" target="_blank">2LPW</a></li>
<li><a href="SI/g4db report - 2LXQ.html" target="_blank">2LXQ</a></li>
<li><a href="SI/g4db report - 2M4P.html" target="_blank">2M4P</a></li>
<li><a href="SI/g4db report - 2M27.html" target="_blank">2M27</a></li>
<li><a href="SI/g4db report - 2MGN.html" target="_blank">2MGN</a></li>
<li><a href="SI/g4db report - 2N4Y.html" target="_blank">2N4Y</a></li>
<li><a href="SI/g4db report - 2O3M.html" target="_blank">2O3M</a></li>
<li><a href="SI/g4db report - 21G.html" target="_blank">21G</a></li>
<li><a href="SI/g4db report - 5I2V.html" target="_blank">5I2V</a></li>
<li><a href="SI/g4db report - 5LQG.html" target="_blank">5LQG</a></li>
<li><a href="SI/g4db report - 5NYS.html" target="_blank">5NYS</a></li>
<li><a href="SI/g4db report - 5YEY.html" target="_blank">5YEY</a></li>
<li><a href="SI/g4db report - 6GZN.html" target="_blank">6GZN</a></li>
<li><a href="SI/g4db report - HIV-PRO1.html" target="_blank">HIV-PRO1</a></li>
</ul>
</div>
<hr>
<br>
<h1 class="section-heading">G-quadruplexes in details</h1>
<p>Click on the pdb code and data links (HTML, PDF, Word) for more details. Click on the structures and their diagram to enlarge.</p>
<p class="text-muted">Sort columns by clicking on column heads (shift key for several columns). Reorder columns by drag and dropping. Filter data with the top-right search field, or the <span style="color: #5181FC"><b>filters</b></span> button. Copy to clipboard or export in .csv, .xlsx. or .pdf from the buttons below.</p>
</div>
</div>
</div>
<!-- <table class="oligotable"> -->
<div class="container" width="100%">
<div class="row">
<div class="col-md-16 mx-auto my-auto">
<table id="oligotable" class="table table-striped table-borderless table-hover table-sm table-responsive" width="100%">
<thead>
<tr>
<th>PDB</th>
<th>Data</th>
<th>Description</th>
<th>Sequence</th>
<th>Length</th>
<th>Topology</th>
<th>Quartets</th>
<th>Diagram</th>
<th>Structure</th>
</thead>
<tfoot>
<tr>
<th>PDB</th>
<th>Data</th>
<th>Description</th>
<th>Sequence</th>
<th>Length</th>
<th>Topology</th>
<th>Quartets</th>
<th>
<span style="color: tan">dG</span> |
<span style="color: pink">dC</span> |
<span style="color: lightblue">dA</span> |
<span style="color: lightgreen">dT</span>
</th>
<th>
<span style="color: tan">dG</span> |
<span style="color: pink">dC</span> |
<span style="color: lightblue">dA</span> |
<span style="color: lightgreen">dT</span> |
<span style="color: hotpink">ligand</span>
</th>
</tr>
</tfoot>
<tbody>
<tr>
<td><a href="https://www.rcsb.org/structure/143D" data-toggle="modal">22AG (143D)</a></td>
<td>
<a href="SI/g4db report - 22AG.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 22AG.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 22AG.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex</span>
<br>
<span style="color: red"><u>NOTE: 22AG is polymorphic in KCl solutions, 143D is only one possible conformer</u></span></td>
<td>AGGGTTAGGGTTAGGGTTAGGG</td>
<td>22</td>
<td>polymorphic (shown conformer: antiparallel)</td>
<td>NA</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/22AG.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/143D.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/1XAV" target="_blank">1XAV</a></td>
<td>
<a href="SI/g4db report - 1XAV.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 1XAV.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 1XAV.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Major G-quadruplex structure formed in human c-MYC promoter, a monomeric parallel-stranded quadruplex</span></td>
<td>TGAGGGTGGGTAGGGTGGGTAA</td>
<td>22</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/1XAV.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/1XAV.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2GKU" target="_blank">2GKU</a></td>
<td>
<a href="SI/g4db report - 2GKU.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2GKU.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2GKU.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Monomeric human telomere DNA tetraplex with 3+1 strand fold topology, two edgewise loops and double-chain reversal loop</span></td>
<td>TTGGGTTAGGGTTAGGGTTAGGGA</td>
<td>24</td>
<td>hybrid</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2GKU.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2GKU.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2HY9" target="_blank">2HY9</a></td>
<td>
<a href="SI/g4db report - 2HY9.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2HY9.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2HY9.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Human telomere DNA quadruplex structure in K+ solution hybrid-1 form</span></td>
<td>AAAGGGTTAGGGTTAGGGTTAGGGAA</td>
<td>26</td>
<td>hybrid</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2HY9.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2HY9.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2JPZ" target="_blank">2JPZ</a></td>
<td>
<a href="SI/g4db report - 2JPZ.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2JPZ.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2JPZ.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Human telomere DNA quadruplex structure in K+ solution hybrid-2 form</span></td>
<td>TTAGGGTTAGGGTTAGGGTTAGGGTT</td>
<td>26</td>
<td>hybrid</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2JPZ.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2JPZ.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2JSM" target="_blank">2JSM</a></td>
<td>
<a href="SI/g4db report - 2JSM.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2JSM.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2JSM.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Monomeric human telomere DNA tetraplex with 3+1 strand fold topology, two edgewise loops and double-chain reversal loop</span></td>
<td>TAGGGTTAGGGTTAGGGTTAGGG</td>
<td>23</td>
<td>hybrid</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2JSM.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2JSM.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2KF8" target="_blank">2KF8</a></td>
<td>
<a href="SI/g4db report - 2KF8.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2KF8.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2KF8.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Structure of a two-G-tetrad basket-type intramolecular G-quadruplex formed by human telomeric repeats in K+ solution</span></td>
<td>GGGTTAGGGTTAGGGTTAGGGT</td>
<td>22</td>
<td>antiparallel</td>
<td>2</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2KF8.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2KF8.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2KM3" target="_blank">2KM3</a></td>
<td>
<a href="SI/g4db report - 2KM3.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2KM3.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2KM3.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Structure of an intramolecular G-quadruplex containing a G.C.G.C tetrad formed by human telomeric variant CTAGGG repeats</span></td>
<td>AGGGCTAGGGCTAGGGCTAGGG</td>
<td>22</td>
<td>antiparallel</td>
<td>2</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2KM3.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2KM3.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2KPR" target="_blank">2KPR</a></td>
<td>
<a href="SI/g4db report - 2KPR.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2KPR.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2KPR.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Monomeric intronic human chl1 gene quadruplex DNA</span></td>
<td>GGGTGGGGAAGGGGTGGGT</td>
<td>19</td>
<td>hybrid</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2KPR.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2KPR.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2KYP" target="_blank">2KYP</a></td>
<td>
<a href="SI/g4db report - 2KYP.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2KYP.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2KYP.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Monomeric Human CKIT-2 proto-oncogene promoter quadruplex DNA</span></td>
<td>CGGGCGGGCGCTAGGGAGGGT</td>
<td>21</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2KYP.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2KYP.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2LBY" target="_blank">2LBY</a></td>
<td>
<a href="SI/g4db report - 2LBY.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2LBY.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2LBY.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">G-quadruplex structure formed at the 5'-end of NHEIII_1 element in human c-MYC promoter</span></td>
<td>TAGGGAGGGTAGGGAGGGT</td>
<td>19</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2LBY.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2LBY.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2LEE" target="_blank">2LEE</a></td>
<td>
<a href="SI/g4db report - 2LEE.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2LEE.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2LEE.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">G-quadruplexe adopted by a sequence from intron of N-myc gene</span></td>
<td>TAGGGCGGGAGGGAGGGAA</td>
<td>19</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2LEE.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2LEE.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2LK7" target="_blank">2LK7</a></td>
<td>
<a href="SI/g4db report - 2LK7.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2LK7.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2LK7.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Monomer-dimer equilibrium for 5'-5' stacking of propeller-type parallel-stranded G-quadruplexes</span></td>
<td>TTGGGTGGGTGGGTGGGT</td>
<td>18</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2LK7.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2LK7.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2LOD" target="_blank">2LOD</a></td>
<td>
<a href="SI/g4db report - 2LOD.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2LOD.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2LOD.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Solution-state structure of an intramolecular G-quadruplex with propeller, diagonal and edgewise loops</span></td>
<td>GGGATGGGACACAGGGGACGGG</td>
<td>22</td>
<td>hybrid</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2LOD.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2LOD.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2LPW" target="_blank">2LPW</a></td>
<td>
<a href="SI/g4db report - 2LPW.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2LPW.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2LPW.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Human CEB25 minisatellite G-quadruplex</span></td>
<td>AAGGGTGGGTGTAAGTGTGGGTGGGT</td>
<td>26</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2LPW.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2LPW.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2LXQ" target="_blank">2LXQ</a></td>
<td>
<a href="SI/g4db report - 2LXQ.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2LXQ.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2LXQ.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Monomeric PilE G-Quadruplex DNA from Neisseria Gonorrhoeae</span></td>
<td>TAGGGTGGGTTGGGTGGGGAAT</td>
<td>22</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2LXQ.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2LXQ.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2M4P" target="_blank">2M4P</a></td>
<td>
<a href="SI/g4db report - 2M4P.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2M4P.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2M4P.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Solution structure of an intramolecular propeller-type G-quadruplex containing a single bulge</span></td>
<td>TTGTGGTGGGTGGGTGGGT</td>
<td>19</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2M4P.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2M4P.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2M27" target="_blank">2M27</a></td>
<td>
<a href="SI/g4db report - 2M27.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2M27.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2M27.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Major G-quadruplex structure formed in human VEGF promoter, a monomeric parallel-stranded quadruplex</span></td>
<td>CGGGGCGGGCCTTGGGCGGGGT</td>
<td>22</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2M27.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2M27.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2MGN" target="_blank">2MGN</a></td>
<td>
<a href="SI/g4db report - 2MGN.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2MGN.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2MGN.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Solution structure of a G-quadruplex bound to the bisquinolinium compound
<span style="color: hotpink">Phen-DC3</span>
</span></td>
<td>TGAGGGTGGTGAGGGTGGGGAAGG</td>
<td>24</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2MGN.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2MGN.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2N4Y" target="_blank">2N4Y</a></td>
<td>
<a href="SI/g4db report - 2N4Y.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2N4Y.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2N4Y.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Structure and possible function of a G-quadruplex in the long terminal repeat of the proviral HIV-1 genome</span></td>
<td>CTGGGCGGGACTGGGGAGTGGT</td>
<td>22</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2N4Y.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2N4Y.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/2O3M" target="_blank">2O3M</a></td>
<td>
<a href="SI/g4db report - 2O3M.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 2O3M.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 2O3M.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Monomeric G-DNA tetraplex from human C-kit promoter</span></td>
<td>AGGGAGGGCGCTGGGAGGAGGG</td>
<td>22</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/2O3M.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/2O3M.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/4DA3" target="_blank">21G (4DA3)</a></td>
<td>
<a href="SI/g4db report - 21G.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 21G.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 21G.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Crystal structure of an intramolecular human telomeric DNA G-quadruplex 21-mer bound by the naphthalene diimide compound
<span style="color: hotpink">MM41</span>
<br>
<span style="color: red"><u>NOTE: 21G is polymorphic in KCl solutions, 4DA3 is only one possible conformer</u></span>
</span>
</td>
<td>GGGTTAGGGTTAGGGTTAGGG</td>
<td>21</td>
<td>polymorphic (shown conformer: parallel)</td>
<td>NA</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/21G.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/4DA3.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/5I2V" target="_blank">5I2V</a></td>
<td>
<a href="SI/g4db report - 5I2V.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 5I2V.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 5I2V.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">NMR structure of a new G-quadruplex forming sequence within the KRAS proto-oncogene promoter region</span></td>
<td>AGGGCGGTGTGGGAATAGGGAA</td>
<td>22</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/5I2V.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/5I2V.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/5LQG" target="_blank">5LQG</a></td>
<td>
<a href="SI/g4db report - 5LQG.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 5LQG.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 5LQG.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">A two-quartet G-quadruplex formed by human telomere in KCl solution at neutral pH</span></td>
<td>TAGGGTTAGGGTTAGGGTTAGG</td>
<td>22</td>
<td>antiparallel</td>
<td>2</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/5LQG.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/5LQG.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/5NYS" target="_blank">5NYS</a></td>
<td>
<a href="SI/g4db report - 5NYS.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 5NYS.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 5NYS.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">M2 G-quadruplex dilute solution</span></td>
<td>TAGGGACGGGCGGGCAGGGT</td>
<td>20</td>
<td>parallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/5NYS.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/5NYS.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/5YEY" target="_blank">5YEY</a></td>
<td>
<a href="SI/g4db report - 5YEY.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 5YEY.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 5YEY.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">The structure of a chair-type G-quadruplex of the human telomeric variant in K+ solution</span></td>
<td>GGGTTAGGGTTAGGGTTTGGG</td>
<td>21</td>
<td>antiparallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/5YEY.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/5YEY.png">
</a>
</td>
</tr>
<tr>
<td><a href="https://www.rcsb.org/structure/6GZN" target="_blank">6GZN</a></td>
<td>
<a href="SI/g4db report - 6GZN.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - 6GZN.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - 6GZN.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Adenine-driven structural switch from two- to three-quartet DNA G-quadruplex</span></td>
<td>GGGTAGGGAGCGGGAGAGGG</td>
<td>20</td>
<td>antiparallel</td>
<td>3</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/6GZN.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/6GZN.png">
</a>
</td>
</tr>
<tr>
<td>HIV-PRO1</td>
<td>
<a href="SI/g4db report - HIV-PRO1.html" target="_blank"><i class="fas fa-file-code"></i></a>
<a href="SI/g4db report - HIV-PRO1.pdf" target="_blank"><i class="fas fa-file-pdf"></i></a>
<a href="SI/g4db report - HIV-PRO1.docx" target="_blank"><i class="fas fa-file-word"></i></a>
</td>
<td><span style="font-size: 90%">Two G-tetrad antiparallel G4 with an additional Watson–Crick CG base pair from the HIV-1 promoter region</span></td>
<td>TGGCCTGGGCGGGACTGGG</td>
<td>19</td>
<td>antiparallel</td>
<td>2</td>
<td>
<a class="pop">
<img id='imageresource' src="media/schemes/4x/HIV-PRO1.png">
</a>
</td>
<td>
<a class="pop">
<img id='imageresource' src="media/chimera/HIV-PRO1.png">
</a>
</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
</section>
<section class="features" id="features">
<div class="container">
<div class="section-heading text-center">
<h2><span style="color: #189dd9">g4db</span><span style="color: #46372d">r</span> features</h2>
<p class="text-muted">An R package to build and explore G-quadruplex databases</p>
</div>
<div class="row">
<div class="col-lg-4 my-auto">
<div class="device-container">
<div class="device-mockup iphone6_plus portrait white">
<div class="device">
<div class="screen">
<!-- Demo image for screen mockup, you can put an image here, some HTML, an animation, video, or anything else! -->
<img src="media/logo_g4dbr.png" class="img-fluid" alt="">
</div>
<div class="button">
<!-- You can hook the "home button" to some JavaScript events or just remove it -->
</div>
</div>
</div>
</div>
</div>
<div class="col-lg-8 my-auto">
<div class="container-fluid">
<div class="row">
<div class="col-lg-6">
<div class="feature-item">
<i class="fas fa-dna"></i>
<h3>Analytical methods</h3>
<p class="text-muted">Consolidate results from circular dichroism, <sup>1</sup>H-NMR, UV-melting, and native mass spectrometry. Manage buffers, replicates and tunes.</p>
</div>
</div>
<div class="col-lg-6">
<div class="feature-item">
<i class="fas fa-cogs"></i>
<h3>Data treatment</h3>
<p class="text-muted">UV-melting data treatment, NMR and MS peak labeling, CD normalisation, extinction coefficient determination, and more!</p>
</div>
</div>
</div>
<div class="row">
<div class="col-lg-6">
<div class="feature-item">
<i class="far fa-hand-point-up"></i>
<h3>Interactive</h3>
<p class="text-muted">Filter, select, rescale, colour, and automatically edit Word, HTML or pdf reports</p>
</div>
</div>
<div class="col-lg-6">
<div class="feature-item">
<i class="fas fa-unlock text-primary"></i>
<h3>Open Source</h3>
<p class="text-muted"> GPL-3 licensed software, data readable natively in R and exportable in .csv, .xlsx or the clipboard</p>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</section>
<section class="cta" id="cta">
<div class="cta-content">
<div class="container">
<h2>Get help</h2>
<a href="https://github.com/EricLarG4/g4dbr/raw/master/inst/manual/g4dbr.pdf" target="_blank" class="btn btn-outline btn-xl js-scroll-trigger">Manual</a>
<hr>
<a href="https://ericlarg4.github.io/g4dbr/" target="_blank" class="btn btn-outline btn-xl js-scroll-trigger">Readme</a>
</div>