From 9860edb1cf43a2286d14d36fef3f837f680e1e76 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Fri, 13 Feb 2026 20:45:36 +0000 Subject: [PATCH 1/2] Initial plan From b9f11fe41358f39aee1b3304cf0b67e8a496dfb9 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Fri, 13 Feb 2026 20:47:27 +0000 Subject: [PATCH 2/2] Add standard project structure with directories and documentation Co-authored-by: GonzVerse <196229690+GonzVerse@users.noreply.github.com> --- .gitignore | 86 +++++++++++++++++++++++++++++++++++++++++++++ README.md | 55 ++++++++++++++++++++++++++++- data/README.md | 9 +++++ docs/README.md | 9 +++++ notebooks/README.md | 9 +++++ requirements.txt | 18 ++++++++++ results/README.md | 10 ++++++ scripts/README.md | 9 +++++ src/README.md | 8 +++++ tests/README.md | 9 +++++ 10 files changed, 221 insertions(+), 1 deletion(-) create mode 100644 .gitignore create mode 100644 data/README.md create mode 100644 docs/README.md create mode 100644 notebooks/README.md create mode 100644 requirements.txt create mode 100644 results/README.md create mode 100644 scripts/README.md create mode 100644 src/README.md create mode 100644 tests/README.md diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..1c333e6 --- /dev/null +++ b/.gitignore @@ -0,0 +1,86 @@ +# Python +__pycache__/ +*.py[cod] +*$py.class +*.so +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +pip-wheel-metadata/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# Virtual Environment +venv/ +env/ +ENV/ +env.bak/ +venv.bak/ + +# Jupyter Notebook +.ipynb_checkpoints +*.ipynb_checkpoints + +# IDEs +.vscode/ +.idea/ +*.swp +*.swo +*~ +.DS_Store + +# Data files (uncomment if you want to exclude data) +# data/raw/* +# data/processed/* +# !data/raw/.gitkeep +# !data/processed/.gitkeep + +# Results and outputs +# results/* +# !results/.gitkeep + +# Models +*.h5 +*.pkl +*.joblib +*.pt +*.pth +*.ckpt + +# Logs +*.log +logs/ + +# Environment variables +.env +.env.local + +# Testing +.pytest_cache/ +.coverage +htmlcov/ +.tox/ + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# pytype +.pytype/ + +# OS +Thumbs.db diff --git a/README.md b/README.md index 1d07f39..970eb99 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,55 @@ # Research-Work -This repository is designed to hold code for my independent research +This repository is designed to hold code for my independent research. + +## Project Structure + +``` +Research-Work/ +├── src/ # Source code for the project +├── data/ # Data files (raw and processed) +├── notebooks/ # Jupyter notebooks for exploration and analysis +├── docs/ # Documentation +├── tests/ # Test files +├── scripts/ # Utility scripts +├── results/ # Experimental results and outputs +├── requirements.txt # Python dependencies +├── .gitignore # Git ignore patterns +└── README.md # This file +``` + +## Getting Started + +### Prerequisites +- Python 3.8 or higher +- pip or conda for package management + +### Installation + +1. Clone the repository: +```bash +git clone https://github.com/GonzVerse/Research-Work.git +cd Research-Work +``` + +2. Create a virtual environment (recommended): +```bash +python -m venv venv +source venv/bin/activate # On Windows: venv\Scripts\activate +``` + +3. Install dependencies: +```bash +pip install -r requirements.txt +``` + +## Usage + +Each directory contains its own README with specific guidelines and usage instructions. + +## Contributing + +This is a personal research repository. If you have suggestions or find issues, please open an issue or submit a pull request. + +## License + +See LICENSE file for details (if applicable). diff --git a/data/README.md b/data/README.md new file mode 100644 index 0000000..a67ba29 --- /dev/null +++ b/data/README.md @@ -0,0 +1,9 @@ +# Data + +This directory contains datasets used in the research. + +## Guidelines +- Store raw data in a `raw/` subdirectory +- Store processed data in a `processed/` subdirectory +- Include data documentation and metadata where applicable +- **Note:** Large datasets should not be committed to git. Use `.gitignore` to exclude them or consider using Git LFS. diff --git a/docs/README.md b/docs/README.md new file mode 100644 index 0000000..f1a3fa1 --- /dev/null +++ b/docs/README.md @@ -0,0 +1,9 @@ +# Documentation + +This directory contains project documentation. + +## Contents +- Technical documentation +- Research notes and methodology +- API documentation +- User guides and tutorials diff --git a/notebooks/README.md b/notebooks/README.md new file mode 100644 index 0000000..51c7e61 --- /dev/null +++ b/notebooks/README.md @@ -0,0 +1,9 @@ +# Notebooks + +This directory contains Jupyter notebooks for exploratory data analysis and experiments. + +## Guidelines +- Use descriptive names for notebooks (e.g., `01_data_exploration.ipynb`) +- Clear output before committing notebooks to keep repository clean +- Document findings and insights within notebooks +- Consider converting important analyses to scripts in the `src/` directory diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..258faa1 --- /dev/null +++ b/requirements.txt @@ -0,0 +1,18 @@ +# Core scientific computing +numpy>=1.21.0 +pandas>=1.3.0 +scipy>=1.7.0 + +# Visualization +matplotlib>=3.4.0 +seaborn>=0.11.0 + +# Jupyter +jupyter>=1.0.0 +ipykernel>=6.0.0 + +# Testing +pytest>=7.0.0 +pytest-cov>=3.0.0 + +# Add project-specific dependencies below diff --git a/results/README.md b/results/README.md new file mode 100644 index 0000000..cade019 --- /dev/null +++ b/results/README.md @@ -0,0 +1,10 @@ +# Results + +This directory contains experimental results and outputs. + +## Guidelines +- Store model outputs, figures, and analysis results here +- Organize by experiment or date +- Consider using subdirectories for different experiments +- Document results with accompanying notes or reports +- **Note:** Large result files may need to be excluded from git using `.gitignore` diff --git a/scripts/README.md b/scripts/README.md new file mode 100644 index 0000000..ae2e5de --- /dev/null +++ b/scripts/README.md @@ -0,0 +1,9 @@ +# Scripts + +This directory contains utility scripts for various tasks. + +## Guidelines +- Place standalone scripts here (data preprocessing, training, evaluation, etc.) +- Make scripts executable and add appropriate shebang lines +- Include clear usage instructions in script docstrings or comments +- Consider using argument parsing for configurable scripts diff --git a/src/README.md b/src/README.md new file mode 100644 index 0000000..1952bf2 --- /dev/null +++ b/src/README.md @@ -0,0 +1,8 @@ +# Source Code + +This directory contains the source code for the research project. + +## Structure +- Place reusable modules and libraries here +- Organize code into logical subdirectories as needed +- Follow best practices for code organization and documentation diff --git a/tests/README.md b/tests/README.md new file mode 100644 index 0000000..646650b --- /dev/null +++ b/tests/README.md @@ -0,0 +1,9 @@ +# Tests + +This directory contains test files for the project. + +## Guidelines +- Mirror the structure of the `src/` directory +- Name test files with `test_` prefix (e.g., `test_module.py`) +- Use a testing framework like pytest, unittest, or similar +- Aim for comprehensive test coverage of critical functionality