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DramKey.txt
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100 lines (100 loc) · 13 KB
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Path.Component Process Path Component Path2 Component2 Path_Order Component_Order Orig_Order
Glycolysis..Embden.Meyerhof.pathway...glucose....pyruvate ETC Module "Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate" Energy cons. "Glycoysis, glu=>pyr (EM)" 1 1 6
Pentose.phosphate.pathway..Pentose.phosphate.cycle. ETC Module Pentose phosphate pathway (Pentose phosphate cycle) Energy cons. Pentose Phosphate 1 2 10
Entner.Doudoroff.pathway..glucose.6P....glyceraldehyde.3P...pyruvate ETC Module "Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate" Energy cons. "Glycolysis, G6P=>glycal+pyr (ED)" 1 3 5
Citrate.cycle..TCA.cycle..Krebs.cycle. ETC Module "Citrate cycle (TCA cycle, Krebs cycle)" Energy cons. Citrate Cycle 1 4 3
Glyoxylate.cycle ETC Module Glyoxylate cycle Energy cons. Glyoxylate Cycle 1 5 7
Reductive.pentose.phosphate.cycle..Calvin.cycle. ETC Module Reductive pentose phosphate cycle (Calvin cycle) Energy cons. Reductive Pentose Phosphate 1 6 13
Reductive.citrate.cycle..Arnon.Buchanan.cycle. ETC Module Reductive citrate cycle (Arnon-Buchanan cycle) Energy cons. Reductive Citrate Cycle 1 7 12
Dicarboxylate.hydroxybutyrate.cycle ETC Module Dicarboxylate-hydroxybutyrate cycle Energy cons. Dicarb-HydroxyB Cycle 1 8 4
Hydroxypropionate.hydroxybutylate.cycle ETC Module Hydroxypropionate-hydroxybutylate cycle Energy cons. HydroxyP-HydroxyB Cycle 1 9 8
X3.Hydroxypropionate.bi.cycle ETC Module 3-Hydroxypropionate bi-cycle Energy cons. 3-HydroxyP bi-Cycle 1 10 1
Reductive.acetyl.CoA.pathway..Wood.Ljungdahl.pathway. ETC Module Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway) Energy cons. Reductive acetyl-CoA (WL) 1 11 11
Acetyl.CoA.pathway..CO2....acetyl.CoA ETC Module "Acetyl-CoA pathway, CO2 => acetyl-CoA" Energy cons. "Acetly-CoA, Co2=>acetyl-CoA" 1 12 2
Methanogenesis..CO2....methane ETC Module "Methanogenesis, CO2 => methane" Energy cons. Methanogenesis 1 13 9
Complex.I..NADH.quinone.oxidoreductase..prokaryotes ETC I "NADH:quinone oxidoreductase, prokaryotes" Comp. 1 NADH:quin Oxidored 2 1 16
Complex.I..NAD.P.H.quinone.oxidoreductase..chloroplasts.and.cyanobacteria ETC I "NAD(P)H:quinone oxidoreductase, chloroplasts and cyanobacteria" Comp. 1 NAD(P)H:quin Oxidored 2 2 14
Complex.I..NADH.dehydrogenase..ubiquinone..1.alpha.subcomplex ETC I NADH dehydrogenase (ubiquinone) 1 alpha subcomplex Comp. 1 NADH Dehyd 2 3 15
Complex.II..Succinate.dehydrogenase..ubiquinone. ETC II Succinate dehydrogenase (ubiquinone) Comp. 2 Succinate Dehyd (ubiq) 3 1 18
Complex.II..Succinate.dehydrogenase..prokaryotes ETC II "Succinate dehydrogenase, prokaryotes" Comp. 2 Succinate Dehyd 3 2 19
Complex.II..Fumarate.reductase..prokaryotes ETC II "Fumarate reductase, prokaryotes" Comp. 2 Fumarate Red 3 3 17
Complex.III..Cytochrome.bc1.complex.respiratory.unit ETC III Cytochrome bc1 complex respiratory unit Comp. 3 "Cyt bc1, respiratory" 4 1 21
Complex.III..Cytochrome.bc1.complex ETC III Cytochrome bc1 complex Comp. 3 Cyt bc1 4 2 20
Complex.III..Cytochrome.bd.ubiquinol.oxidase ETC III Cytochrome bd ubiquinol oxidase Comp. 3 Cyt bd 4 3 22
Complex.IV.High.affinity..Cytochrome.bd.ubiquinol.oxidase ETC IV High affinity Cytochrome bd ubiquinol oxidase Comp. 4 Hi Cyt bd 5 1 23
Complex.IV.High.affinity..Cytochrome.c.oxidase..cbb3.type ETC IV High affinity "Cytochrome c oxidase, cbb3-type" Comp. 4 Hi Cyt cbb3 5 2 24
Complex.IV.Low.affinity..Cytochrome.c.oxidase ETC IV Low affinity Cytochrome c oxidase Comp. 4 Lo Cyt c oxidase 6 1 26
Complex.IV.Low.affinity..Cytochrome.c.oxidase..prokaryotes ETC IV Low affinity "Cytochrome c oxidase, prokaryotes" Comp. 4 Lo "Cyt c oxidase, prok" 6 2 27
Complex.IV.Low.affinity..Cytochrome.aa3.600.menaquinol.oxidase ETC IV Low affinity Cytochrome aa3-600 menaquinol oxidase Comp. 4 Lo Cyt aa3 menaquin 6 3 25
Complex.IV.Low.affinity..Cytochrome.o.ubiquinol.oxidase ETC IV Low affinity Cytochrome o ubiquinol oxidase Comp. 4 Lo Cyt o ubiq 6 4 28
Complex.V..F.type.ATPase..prokaryotes.and.chloroplasts ETC V "F-type ATPase, prokaryotes and chloroplasts" Comp. 5 "F-ATPase, prok+chlor" 7 1 30
Complex.V..F.type.ATPase..eukaryotes ETC V "F-type ATPase, eukaryotes" Comp. 5 "F-ATPase, euk" 7 2 29
Complex.V..V.type.ATPase..eukaryotes ETC V "V-type ATPase, eukaryotes" Comp. 5 "V-ATPase, euk" 7 3 31
Complex.V..V.A.type.ATPase..prokaryotes ETC V "V/A-type ATPase, prokaryotes" Comp. 5 "V/A-ATPase, prok" 7 4 32
CAZy..Polyphenolics Other CAZy Polyphenolics Carbohydrates Polyphenolics 1 1 46
CAZy..Crystalline.Cellulose Other CAZy Crystalline Cellulose Carbohydrates Crystalline Cellulose 1 2 41
CAZy..Amorphous.Cellulose Other CAZy Amorphous Cellulose Carbohydrates Amorphous Cellulose 1 3 35
CAZy..Xyloglucan Other CAZy Xyloglucan Carbohydrates Xyloglucan 1 4 51
CAZy..Xylans Other CAZy Xylans Carbohydrates Xylans 1 5 50
CAZy..Alpha.mannan Other CAZy Alpha-mannan Carbohydrates Alpha-mannan 1 6 34
CAZy..Beta.mannan Other CAZy Beta-mannan Carbohydrates Beta-mannan 1 7 39
CAZy..Mixed.Linkage.glucans Other CAZy Mixed-Linkage glucans Carbohydrates Mixed-Linkage glucans 1 8 43
CAZy..Starch Other CAZy Starch Carbohydrates Starch 1 9 48
CAZy..Pectin Other CAZy Pectin Carbohydrates Pectin 1 10 45
CAZy..Arabinan Other CAZy Arabinan Carbohydrates Arabinan 1 11 36
CAZy..Alpha.galactans Other CAZy Alpha-galactans Carbohydrates Alpha-galactans 1 12 33
CAZy..Beta.galactan..pectic.galactan. Other CAZy Beta-galactan (pectic galactan) Carbohydrates Beta-galactan (pectic galactan) 1 13 38
CAZy..Chitin Other CAZy Chitin Carbohydrates Chitin 1 14 40
CAZy..Sulf.Polysachharides Other CAZy Sulf-Polysachharides Carbohydrates Sulf-Polysachharides 1 15 49
CAZy..Mucin Other CAZy Mucin Carbohydrates Mucin 1 16 44
CAZy..Fucose.Cleavage Other CAZy Fucose Cleavage Carbohydrates Fucose Cleavage 1 17 42
CAZy..Arabinose.cleavage Other CAZy Arabinose cleavage Carbohydrates Arabinose cleavage 1 18 37
CAZy..Rhamnose.cleavage Other CAZy Rhamnose cleavage Carbohydrates Rhamnose cleavage 1 19 47
Nitrogen.metabolism..ammonia....nitrite Other Nitrogen metabolism ammonia => nitrite Nitrogen ammonia=>nitrite 2 1 68
Nitrogen.metabolism..Bacterial.Archaeal.ammonia.oxidation Other Nitrogen metabolism Bacterial/Archaeal ammonia oxidation Nitrogen Bact/Arch ammonia ox 2 2 65
Nitrogen.metabolism..Bacterial..aerobic.specific..ammonia.oxidation Other Nitrogen metabolism Bacterial (aerobic-specific) ammonia oxidation Nitrogen "ammonia ox, aerobic" 2 3 63
Nitrogen.metabolism..Bacterial..anaerobic.specific..ammonia.oxidation Other Nitrogen metabolism Bacterial (anaerobic-specific) ammonia oxidation Nitrogen "ammonia ox, anaerobic" 2 4 64
Nitrogen.metabolism..nitrite....nitrate Other Nitrogen metabolism nitrite => nitrate Nitrogen nitrite=>nitrate 2 5 71
Nitrogen.metabolism..nitrate....nitrite Other Nitrogen metabolism nitrate => nitrite Nitrogen nitrate=>nitrite 2 6 69
Nitrogen.metabolism..nitrite....nitric.oxide Other Nitrogen metabolism nitrite => nitric oxide Nitrogen nitrite=>nitric oxide 2 7 72
Nitrogen.metabolism..Dissimilatory.nitrite.reduction.to.ammonia..DNRA. Other Nitrogen metabolism Dissimilatory nitrite reduction to ammonia (DNRA) Nitrogen DNRA 2 8 66
Nitrogen.metabolism..nitric.oxide....nitrous.oxide Other Nitrogen metabolism nitric oxide => nitrous oxide Nitrogen nitric oxide=>nitrous oxide 2 9 70
Nitrogen.metabolism..nitrous.oxide....nitrogen Other Nitrogen metabolism nitrous oxide => nitrogen Nitrogen nitrous oxide=>nitrogen 2 10 74
Nitrogen.metabolism..Nitrogen.fixation.altennative Other Nitrogen metabolism Nitrogen fixation alternative Nitrogen Nitrogen fixation alternative 2 12 67
Nitrogen.metabolism..nitrogen....ammonia Other Nitrogen metabolism nitrogen => ammonia Nitrogen nitrogen=>ammonia 2 22 73
Sulfur.metabolism..dissimilatory.sulfate.reduction..and.oxidation..sulfate....sulfide Other Sulfur metabolism dissimilatory sulfate reduction (and oxidation) sulfate => sulfide Sulfur sulfate=>sulfide 3 1 96
Sulfur.metabolism..thiosulfate....sulfite Other Sulfur metabolism thiosulfate => sulfite Sulfur "thiosulfate=>sulfite, opt. 1" 3 2 98
Sulfur.metabolism..thiosulfate.reduction..thiosulfate....sulfite Other Sulfur metabolism "thiosulfate reduction, thiosulfate => sulfite" Sulfur "thiosulfate=>sulfite, opt. 2" 3 3 99
Sulfur.metabolism..Thiosulfate.oxidation.by.SOX.complex..thiosulfate....sulfate Other Sulfur metabolism "Thiosulfate oxidation by SOX complex, thiosulfate => sulfate" Sulfur "SOX, thiosulfate=>sulfate" 3 4 95
Sulfur.metabolism..tetrathionate....thiosulfate Other Sulfur metabolism tetrathionate => thiosulfate Sulfur tetrathionate=>thiosulfate 3 5 97
Other.Reductases..selenate.Chlorate.reduction Other Other Reductases selenate/Chlorate reduction Other selenate/Chlorate reduction 4 1 79
Other.Reductases..TMAO.reductase Other Other Reductases TMAO reductase Other TMAO reductase 4 2 75
Other.Reductases..mercury.reduction Other Other Reductases mercury reduction Other mercury reduction 4 3 78
Other.Reductases..arsenate.reduction..pt.1 Other Other Reductases "arsenate reduction, pt 1" Other "arsenate reduction, pt 1" 4 4 76
Other.Reductases..arsenate.reduction..pt.2 Other Other Reductases "arsenate reduction, pt 2" Other "arsenate reduction, pt 2" 4 5 77
Photosynthesis..Photosystem.I Other Photosynthesis Photosystem I Photo. Photosystem I 5 1 80
Photosynthesis..Photosystem.II Other Photosynthesis Photosystem II Photo. Photosystem II 5 2 81
Methanogenesis.and.methanotrophy..Key.functional.gene Other Methanogenesis and methanotrophy Key functional gene Methane Key functional gene (mcr) 6 1 52
Methanogenesis.and.methanotrophy..acetate....methane..pt.1 Other Methanogenesis and methanotrophy "acetate => methane, pt 1" Methane "acetate=>methane, pt 1" 6 2 53
Methanogenesis.and.methanotrophy..acetate....methane..pt.2 Other Methanogenesis and methanotrophy "acetate => methane, pt 2" Methane "acetate=>methane, pt 2" 6 3 54
Methanogenesis.and.methanotrophy..acetate....methane..pt.3 Other Methanogenesis and methanotrophy "acetate => methane, pt 3" Methane "acetate=>methane, pt 3" 6 4 55
Methanogenesis.and.methanotrophy..methanol....methane Other Methanogenesis and methanotrophy methanol => methane Methane methanol=>methane 6 5 59
Methanogenesis.and.methanotrophy..trimethylamine....dimethylamine Other Methanogenesis and methanotrophy trimethylamine => dimethylamine Methane trimethylamine=>dimethylamine 6 6 62
Methanogenesis.and.methanotrophy..dimethylamine....monomethylamine Other Methanogenesis and methanotrophy dimethylamine => monomethylamine Methane dimethylamine=>monomethylamine 6 7 56
Methanogenesis.and.methanotrophy..monomethylamine....ammonia Other Methanogenesis and methanotrophy monomethylamine => ammonia Methane monomethylamine=>ammonia 6 8 60
Methanogenesis.and.methanotrophy..putative.but.not.defining.CO2....methane Other Methanogenesis and methanotrophy putative but not defining CO2 => methane Methane put. CO2=>methane 6 9 61
Methanogenesis.and.methanotrophy..methane....methanol..with.oxygen..pmo. Other Methanogenesis and methanotrophy "methane => methanol, with oxygen (pmo)" Methane methane=>methanol (pmo) 6 10 58
Methanogenesis.and.methanotrophy..methane....methanol..with.oxygen..mmo. Other Methanogenesis and methanotrophy "methane => methanol, with oxygen (mmo)" Methane methane=>methanol (mmo) 6 11 57
SCFA.and.alcohol.conversions..pyruvate....acetyl.CoA.v1 Other SCFA and alcohol conversions pyruvate => acetyl CoA v1 "Acids, alcohols" pyruvate=>acetyl CoA v1 7 1 92
SCFA.and.alcohol.conversions..pyruvate....acetyl.CoA.v2 Other SCFA and alcohol conversions pyruvate => acetyl CoA v2 "Acids, alcohols" pyruvate=>acetyl CoA v2 7 2 93
SCFA.and.alcohol.conversions..pyruvate....acetylCoA.f..formate.v3 Other SCFA and alcohol conversions pyruvate => acetylCoA f+ formate v3 "Acids, alcohols" pyruvate=>acetyl CoA + formate 7 3 94
SCFA.and.alcohol.conversions..acetate..pt.1 Other SCFA and alcohol conversions "acetate, pt 1" "Acids, alcohols" "acetate, pt 1" 7 4 87
SCFA.and.alcohol.conversions..acetate..pt.2 Other SCFA and alcohol conversions "acetate, pt 2" "Acids, alcohols" "acetate, pt 2" 7 5 88
SCFA.and.alcohol.conversions..acetate..pt.3 Other SCFA and alcohol conversions "acetate, pt 3" "Acids, alcohols" "acetate, pt 3" 7 6 89
SCFA.and.alcohol.conversions..lactate.L Other SCFA and alcohol conversions lactate L "Acids, alcohols" lactate L 7 7 91
SCFA.and.alcohol.conversions..lactate.D Other SCFA and alcohol conversions lactate D "Acids, alcohols" lactate D 7 8 90
SCFA.and.alcohol.conversions..Butyrate..pt.1 Other SCFA and alcohol conversions "Butyrate, pt 1" "Acids, alcohols" "Butyrate, pt 1" 7 9 83
SCFA.and.alcohol.conversions..Butyrate..pt.2 Other SCFA and alcohol conversions "Butyrate, pt 2" "Acids, alcohols" "Butyrate, pt 2" 7 10 84
SCFA.and.alcohol.conversions..Propionate..pt.1 Other SCFA and alcohol conversions "Propionate, pt 1" "Acids, alcohols" "Propionate, pt 1" 7 11 85
SCFA.and.alcohol.conversions..Propionate..pt.2 Other SCFA and alcohol conversions "Propionate, pt 2" "Acids, alcohols" "Propionate, pt 2" 7 12 86
SCFA.and.alcohol.conversions..Alcohol.production Other SCFA and alcohol conversions Alcohol production "Acids, alcohols" Alcohol production 7 13 82