diff --git a/qualityCheck.sh b/qualityCheck.sh index 4a8aa8c..7b4b600 100755 --- a/qualityCheck.sh +++ b/qualityCheck.sh @@ -373,7 +373,7 @@ function EPItoT1reg() { --t1=${t1SkullData} \ --t1brain=${t1Data} \ --out=$epiWarpDir/EPItoT1 \ - --fmap=FM_UD_fmap_mag \ + --fmap=FM_UD_fmap \ --fmapmag=FM_UD_fmap_mag \ --fmapmagbrain=FM_UD_fmap_mag_brain \ --echospacing=${dwellTime} \