From ac2079ecc20c74e8a4123fc541eb9d2814b753f9 Mon Sep 17 00:00:00 2001
From: tbweng <timothy-weng@uiowa.edu>
Date: Wed, 25 Apr 2018 23:39:20 -0400
Subject: [PATCH] [FIX] epi_reg not reading correct fmap

---
 qualityCheck.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/qualityCheck.sh b/qualityCheck.sh
index 4a8aa8c..7b4b600 100755
--- a/qualityCheck.sh
+++ b/qualityCheck.sh
@@ -373,7 +373,7 @@ function EPItoT1reg() {
       --t1=${t1SkullData} \
       --t1brain=${t1Data} \
       --out=$epiWarpDir/EPItoT1 \
-      --fmap=FM_UD_fmap_mag \
+      --fmap=FM_UD_fmap \
       --fmapmag=FM_UD_fmap_mag \
       --fmapmagbrain=FM_UD_fmap_mag_brain \
       --echospacing=${dwellTime} \