topometryNoSC/.github/workflows/ci.yml at master · HauserGroup/topometryNoSC · GitHub

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name: CI

on:
  push:
    branches: [master]
  pull_request:

concurrency:
  group: ci-${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

permissions:
  contents: read

jobs:
  lint:
    name: Lint & type-check
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v7

      - name: Install uv
        uses: astral-sh/setup-uv@v8.2.0
        with:
          python-version: "3.12"
          enable-cache: true

      - name: Sync dev environment
        run: uv sync --all-extras --group dev

      - name: Ruff lint
        run: uv run ruff check src/topo

      - name: Ruff format check
        run: uv run ruff format --check src/topo

  docs:
    name: Build docs
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v7

      - name: Install uv
        uses: astral-sh/setup-uv@v8.2.0
        with:
          python-version: "3.12"
          enable-cache: true

      - name: Sync docs environment
        run: uv sync --group docs

      - name: Build docs
        run: uv run zensical build

  test:
    name: Test py${{ matrix.python-version }}
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.12", "3.13"]

    steps:
      - uses: actions/checkout@v7

      - name: Install uv
        uses: astral-sh/setup-uv@v8.2.0
        with:
          python-version: ${{ matrix.python-version }}
          enable-cache: true
          cache-suffix: py${{ matrix.python-version }}

      - name: Sync test environment
        run: uv sync --all-extras --group dev

      - name: Check UMAP dependency
        run: uv run python -c "import umap; from umap.umap_ import fuzzy_simplicial_set"

      - name: Run tests
        run: uv run pytest --cov=topo --cov-report=xml

      - name: Smoke-test minimal-core install
        run: |
          uv venv /tmp/core-env --python ${{ matrix.python-version }}
          uv pip install --python /tmp/core-env/bin/python .
          /tmp/core-env/bin/python -c "import topo; print('core import OK', topo.__version__)"

      - name: Upload coverage
        if: matrix.python-version == '3.12'
        uses: actions/upload-artifact@v6
        with:
          name: coverage-xml
          path: coverage.xml