integrative_omics_schizophrenia

code accompanying the manuscript

Transcriptomic and genetic analysis suggests a role for mitochondrial dysregulation in schizophrenia

Lisa Bast, Shuyang Yao, José A. Martínez-López, Fatima Memic, Hayley French, Milda Valiukonyte, Robert Karlsson, Jia Wen, Jie Song, Ruyue Zhang, Anthony Abrantes, Frank Koopmans, Anne-May Österholm, Gorazd Rosoklija, J. John Mann, Aleksandar Stankov, Iskra Trencevska, Andrew Dwork, Craig A. Stockmeier, Michael I. Love, Paola Giusti-Rodriguez, August B. Smit, Patrick F. Sullivan, and Jens Hjerling-Leffler

The preprint is available through MedRxiv.

Notes on code structure and software/ package versions:

• The numbering in folder and file names indicate in which order to run the code.
• The software_info.xlsx file contains software and package version information for respective code folders.
• Alternatively, the singularity_scRNAseq_SCZ_CTRL_310124.def can be used to build and use a singularity container.