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CompositionForest.py
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896 lines (810 loc) · 35.1 KB
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import numpy as np
import pandas as pd
import argparse
import random
import uuid
import copy
import itertools
def simplification(c1, c2):
dict_implication = {"1101": 1, "1110": 0, "1100": None, "0110": None, "0100": 0, "1000": 1}
string = str(int(c1[0]))+str(int(c1[1]))+str(int(c2[0]))+str(int(c2[1]))
return dict_implication[string]
def list_of_combination(labels, len_window):
listofcombinations = []
for l in np.arange(2, len_window):
listofcombinations += [ list(c) for c in list(itertools.product(labels, repeat=l+1)) ]
return listofcombinations
def list_of_possible_combination(features, max_size=10):
listofcombinations = []
for f in features:
i = len(f)//2
for w in range(min(len(f[i:]), max_size//2)):
listofcombinations.append(f[i-w-1:i+w+2])
return listofcombinations
def list_of_possible_conditions(values):
listofconditions = []
for v in values:
cond = list(np.argsort(v))
conditions = list( itertools.combinations(cond, 2) )
for c in conditions:
listofconditions.append(c)
return listofconditions
def checkcondition(v, c):
return c in list( itertools.combinations(list(np.argsort(v)), 2) )
def islistinlist(s, l):
return True in [ s==sl for sl in [l[index:index+len(s)] for index in range(len(l)-len(s)+1) ] ]
def rule_horizontal_pruning(rules):
for j, rule_branch in enumerate(rules):
print("support:", rule_branch[0][0])
for k, (n, r) in enumerate(rule_branch):
print(r, end=" ")
print("AND" if k < len(rule_branch)-1 else "\n", end=" " )
print("OR" if j < len(rules)-1 else "" )
def construct_rulestr(feat, cond, ind):
string = ""
for f, c, i in zip(feat, cond, ind):
sc = "" if c is True else "not("
ec = "" if c is True else ")"
string += sc+f+"_"+str(i)+ec+"."
return string[:-1] # remove the last "." char
def rule2str(rule):
cond1 = "" if rule["conditions"][0] is None else "not(" if not(rule["conditions"][0]) else ""
endcond1 = "" if rule["conditions"][0] is None else ")" if not(rule["conditions"][0]) else ""
cond2 = "" if rule["conditions"][1] is None else ".not(" if not(rule["conditions"][1]) else "."
endcond2 = "" if rule["conditions"][1] is None else ")" if not(rule["conditions"][1]) else ""
feat1 = "" if rule["features"][0] is None else rule["features"][0]
i1 = "" if rule["features"][0] is None else "_"+str(rule["index"])
feat2 = "" if rule["features"][1] is None else rule["features"][1]
i2 = "" if rule["features"][1] is None else "_"+str(rule["index"]+1)
return cond1+feat1+i1+endcond1+cond2+feat2+i2+endcond2
def gini_impurity(data, nclasses):
prob = [0. for _ in range(nclasses)]
N = len(data)
for i in data:
if type(i) is int:
prob[i] += 1/N
# multiclass support
best_class = np.argmax(prob)
for i in data:
if type(i) is list:
if best_class in i:
prob[best_class] += 1/N
else:
for j in i:
prob[j] += (1/(len(i))) * (1/N)
prob = np.array(prob)
return np.sum(prob*(1-prob))
class node_tree():
def __init__(self, features, values, classes, gini, parent, split_rule, active=True):
self.features = features
self.classes = classes
self.values = values
self.gini = gini
self.parent = parent
self.split_rule = split_rule
self.id = uuid.uuid1()
self.active = active
def set_features(self, features):
self.features = features
def set_values(self, values):
self.values = values
def set_classes(self, classes):
self.classes = classes
def set_gini(self, gini):
self.gini = gini
def set_parent(self, parent):
self.parent = parent
def set_split_rule(self, split_rule):
self.split_rule = split_rule
def activate(self):
self.active = True
def deactivate(self):
self.active = False
def dict(self):
d = {"features": self.features, "values": self.values, "classes": self.classes, "gini": self.gini, "id": self.id, "parent": self.parent, "split_rule": self.split_rule, "active":self.active}
return d
class branch_tree():
def __init__(self, nodes, nfeat, nclasses):
self.nodes = copy.deepcopy(nodes)
self.nfeat = nfeat
self.nclasses = nclasses
def set_nodes(self, nodes):
self.nodes = copy.deepcopy(nodes)
def delete_node(self, node):
for i, n in enumerate(self.nodes):
if n.id == node.id:
del self.nodes[i]
def prune_branch(self):
rules = {}
for i in range(self.nfeat):
rules[i] = None
for node in self.nodes:
rule = node.split_rule
for i, condition in enumerate(rule["conditions"]):
if condition == True:
rules[rule["indices"][i]] = { "labels" : rule["features"][i],
"condition": rule["conditions"][i] }
for k, v in rules.items():
if not v == None:
for node in self.nodes:
rule = node.split_rule
for i, conditions in enumerate(rule["conditions"]):
if rule["indices"][i] == k:
rule["features"][i] = v["labels"]
rule["conditions"][i] = True
rule["rule"] = construct_rulestr(rule["features"], rule["conditions"], rule["indices"])
def get_parent(self, id):
for node in [n for n in self.nodes if n.active]:
if node.id == id:
return node
return None
def get_children(self, id):
root = self.get_root()
for node in [n for n in self.nodes if n.active]:
if not node == root and node.parent == id:
return node
return None
def get_root(self):
for node in [n for n in self.nodes if n.active]:
if node.id == node.parent:
return node
return None
def get_leaf(self):
for node in [n for n in self.nodes if n.active]:
if self.get_children(node.id) is None:
return node
def branch_descent(self):
descent = [self.get_root()]
leaf = self.get_leaf()
while not descent[-1] is leaf:
descent.append(self.get_children(descent[-1].id))
return lnodes
def merge_two_branches(self, branch):
bd1 = self.branch_descent()
bd2 = branch.branch_descent()
merge = []
if not len(bd1) == len(bd2):
return None
else:
for n1, n2 in zip(bd1, bd2):
if n1.id == n2.id:
merge.append(n1)
elif n1.split_rule["features"] == n2.split_rule["features"] and simplification(n1.split_rule["conditions"], n2.split_rule["conditions"]):
index_to_keep = simplification(n1.split_rule["conditions"], n2.split_rule["conditions"])
feat = n1.split["features"][index_to_keep]
cond = n1.split["conditions"][index_to_keep]
classes = n1.classes + n2.classes
features = n1.features + n2.features
gini = gini_impurity(classes, self.nclasses)
strrule = construct_rulestr(feat, cond, index_to_keep)
split_rule = {"features": feat, "conditions": cond }
#node_tree( features, classes, gini, n1.parent, split_rule_types[i]))
return branch
class composition_tree():
def __init__(self, nclasses=2, nfeat=2, labels=None, iteration_max=10000, epsilon = 1e-6):
self.nclasses = nclasses
self.nfeat = nfeat
if labels:
self.labels = labels
else:
self.labels = list(range(nfeat))
self.tree = []
self.queue = []
self.rules = []
self.root = None
self.epsilon = epsilon
self.iteration_max = iteration_max
def split(self, node):
features = node.features
classes = node.classes
values = node.values
parent = node.parent
gini_orig = node.gini
split_rule_true = []
split_rule_false = []
classes_true = []
classes_false = []
features_true = []
features_false = []
values_true = []
values_false = []
gini_true = 0
gini_false = 0
N = len(classes)
gain_gini = 0
best_comb = []
features_with_anomaly = [f for f,c in zip(features, classes) if c != 0 ]
#print(len(features_with_anomaly))
for comb in list_of_possible_combination(features_with_anomaly):
#for comb in list_of_combination(self.labels, self.nfeat):
split_true = [c for f, c in zip(features, classes) if islistinlist(comb,f)]
split_false = [c for f, c in zip(features, classes) if not islistinlist(comb,f)]
g_true = gini_impurity(split_true, self.nclasses)
g_false = gini_impurity(split_false, self.nclasses)
g = ( g_true * (len(split_true)/N) + g_false * (len(split_false)/N) )
gain = gini_orig - g
#print(comb, gain, end="\r")
if gain > gain_gini :#or (gain == gain_gini and len(comb) > len(best_comb)) :
gain_gini = gain
gini_true = g_true
gini_false = g_false
best_comb = comb
split_rule_true = {"features":comb, "conditions": True, "rule" : str(comb) }
split_rule_false = {"features":comb, "conditions": False, "rule" : "not("+ str(comb) + ")" }
classes_true = split_true
classes_false = split_false
values_true = [v for f, v in zip(features, values) if islistinlist(comb, f)]
values_false = [v for f, v in zip(features, values) if not islistinlist(comb,f)]
features_true = [f for f in features if islistinlist(comb, f)]
features_false = [f for f in features if not islistinlist(comb,f)]
node_true = node_tree(features_true, values_true, classes_true, gini_true, node.id, split_rule_true)
node_false = node_tree(features_false, values_false, classes_false, gini_false, node.id, split_rule_false)
return node_true, node_false, gain_gini
def fit(self, features, values, classes):
self.features = features
self.classes = classes
self.values = values
gini = gini_impurity(classes, self.nclasses)
root = node_tree(features, values, classes, gini, 0, None)
root.set_parent(root.id)
self.root = root
self.tree = [ root ]
self.queue = [ root ]
n = 0
index = 0
while not len(self.queue) == 0 and n < self.iteration_max:
node = self.queue.pop(0)
node_true, node_false, gain_gini = self.split(node)
#print(gain_gini, [x for i, x in enumerate(node_true.classes) if i == node_true.classes.index(x)], [x for i, x in enumerate(node_false.classes) if i == node_false.classes.index(x)])
if len(node_true.classes)>0:
self.tree.append( node_true )
if len(node_false.classes)>0:
self.tree.append( node_false )
if gain_gini > self.epsilon:
if node_true.gini > self.epsilon and len(node_true.classes) >0:
self.queue.append(node_true)
if node_false.gini > self.epsilon and len(node_false.classes) > 0:
self.queue.append(node_false)
n += 1
index += 1
self.rules = self.rules_per_class()
def rules_per_class(self):
leaves = self.get_leaves()
branches = [(l.classes, self.get_branch(l)) for l in leaves]
rules_per_class = [[] for _ in range(self.nclasses)]
b = []
for i, (classes, branch) in enumerate(branches):
if not len(classes) == 0:
setclasses =[x for i, x in enumerate(classes) if i == classes.index(x)]
c = max( setclasses, key = classes.count)
listofrule = [ (len(n.classes), n.split_rule, n.id) for n in branch if n.split_rule]
#listofrule = [ (n.split_rule) for n in branch if n.split_rule]
rules_per_class[c].append(listofrule)
return rules_per_class
def composition(self):
leaves = self.get_leaves()
branches = [(l.classes, self.get_branch(l)) for l in leaves]
rules_per_class = [[] for _ in range(self.nclasses)]
for i, (classes, branch) in enumerate(branches):
if not len(classes) == 0:
setclasses =[x for i, x in enumerate(classes) if i == classes.index(x)]
c = max(setclasses, key = classes.count)
listofrule = [n for n in branch if n.split_rule]
rules_per_class[c].append(listofrule)
return rules_per_class
def is_class(self, feat, c):
predicted_class = []
rules_for_class = self.rules[c]
#pc = [True for _ in range(len(rules_for_class))]
isclass = False
for i, srules in enumerate(rules_for_class):
fitrule = True
for rule in srules:
f1 = feat[rule["index"]]
f2 = feat[rule["index"]+1]
condition = f1 == rule["features"][0] and f2 == rule["features"][1]
#pc[i] = pc[i] and condition == rule["condition"]
fitrule = fitrule and condition == rule["conditions"]
isclass = isclass or fitrule
return isclass
def inclusive_branch(self):
leaves = self.get_leaves()
branches = [(l.classes, self.get_branch(l)) for l in leaves]
inclusive_branches = []
for c, branch in branches:
#print(c)
condition = True
for node in branch:
if node.split_rule:
condition = condition and node.split_rule["conditions"]
if condition == False:
break
if condition == True:
#inclusive_branch = branch
inclusive_branches.append(branch)
return inclusive_branches
def predict(self, feat):
predicted_class = []
for c in range(len(self.rules)):
ic = self.is_class(feat, c)
predicted_class.append(ic)
return predicted_class
def get_root(self):
for node in self.tree:
if node.id == node.parent:
return node
def get_parent(self, id):
for node in self.tree:
if node.id == id:
return node
def get_childrens(self, id):
childrens = []
for node in self.tree:
if not node == self.root and node.parent == id:
childrens.append(node)
return childrens
def get_branch(self, leaf):
branch = [leaf]
node = leaf
while not node == self.root :
node = self.get_parent(node.parent)
branch.append(node)
return branch
def get_leaves(self):
leaves = []
for node in self.tree:
if node.gini == 0:
leaves.append(node)
else:
childrens = self.get_childrens(node.id)
if len(childrens) == 0:
leaves.append(node)
return leaves
class pattern_tree():
def __init__(self, nclasses=2, nfeat=2, labels=None, iteration_max=10000, epsilon = 1e-6):
self.nclasses = nclasses
self.nfeat = nfeat
if labels:
self.labels = labels
else:
self.labels = list(range(nfeat))
self.tree = []
self.queue = []
self.rules = []
self.root = None
self.epsilon = epsilon
self.iteration_max = iteration_max
def split(self, node):
features = node.features
classes = node.classes
values = node.values
parent = node.parent
gini_orig = node.gini
split_rule_true = []
split_rule_false = []
classes_true = []
classes_false = []
features_true = []
features_false = []
values_true = []
values_false = []
gini_true = 0
gini_false = 0
N = len(classes)
gain_gini = 0
best_comb = []
features_with_anomaly = [f for f,c in zip(features, classes) if c != 0 ]
#print(len(features_with_anomaly))
for comb in list_of_possible_combination(features_with_anomaly):
#for comb in list_of_combination(self.labels, self.nfeat):
split_true = [c for f, c in zip(features, classes) if islistinlist(comb,f)]
split_false = [c for f, c in zip(features, classes) if not islistinlist(comb,f)]
g_true = gini_impurity(split_true, self.nclasses)
g_false = gini_impurity(split_false, self.nclasses)
g = ( g_true * (len(split_true)/N) + g_false * (len(split_false)/N) )
gain = gini_orig - g
print(comb, gain, end="\r")
if gain > gain_gini :#or (gain == gain_gini and len(comb) > len(best_comb)) :
gain_gini = gain
gini_true = g_true
gini_false = g_false
best_comb = comb
split_rule_true = {"features":comb, "conditions": True, "rule" : str(comb) }
split_rule_false = {"features":comb, "conditions": False, "rule" : "not("+ str(comb) + ")" }
classes_true = split_true
classes_false = split_false
values_true = [v for f, v in zip(features, values) if islistinlist(comb, f)]
values_false = [v for f, v in zip(features, values) if not islistinlist(comb,f)]
features_true = [f for f in features if islistinlist(comb, f)]
features_false = [f for f in features if not islistinlist(comb,f)]
node_true = node_tree(features_true, values_true, classes_true, gini_true, node.id, split_rule_true)
node_false = node_tree(features_false, values_false, classes_false, gini_false, node.id, split_rule_false)
return node_true, node_false, gain_gini
def fit(self, features, values, classes):
self.features = features
self.classes = classes
self.values = values
gini = gini_impurity(classes, self.nclasses)
root = node_tree(features, values, classes, gini, 0, None)
root.set_parent(root.id)
self.root = root
self.tree = [ root ]
self.queue = [ root ]
n = 0
index = 0
while not len(self.queue) == 0 and n < self.iteration_max:
node = self.queue.pop(0)
node_true, node_false, gain_gini = self.split(node)
#print(gain_gini, [x for i, x in enumerate(node_true.classes) if i == node_true.classes.index(x)], [x for i, x in enumerate(node_false.classes) if i == node_false.classes.index(x)])
if len(node_true.classes)>0:
self.tree.append( node_true )
if len(node_false.classes)>0:
self.tree.append( node_false )
if gain_gini > self.epsilon:
if node_true.gini > self.epsilon and len(node_true.classes) >0:
self.queue.append(node_true)
if node_false.gini > self.epsilon and len(node_false.classes) > 0:
self.queue.append(node_false)
n += 1
index += 1
self.rules = self.rules_per_class()
def rules_per_class(self):
leaves = self.get_leaves()
branches = [(l.classes, self.get_branch(l)) for l in leaves]
rules_per_class = [[] for _ in range(self.nclasses)]
b = []
for i, (classes, branch) in enumerate(branches):
if not len(classes) == 0:
setclasses =[x for i, x in enumerate(classes) if i == classes.index(x)]
c = max( setclasses, key = classes.count)
listofrule = [ (len(n.classes), n.split_rule, n.id) for n in branch if n.split_rule]
#listofrule = [ (n.split_rule) for n in branch if n.split_rule]
rules_per_class[c].append(listofrule)
return rules_per_class
def composition(self):
leaves = self.get_leaves()
branches = [(l.classes, self.get_branch(l)) for l in leaves]
rules_per_class = [[] for _ in range(self.nclasses)]
for i, (classes, branch) in enumerate(branches):
if not len(classes) == 0:
setclasses =[x for i, x in enumerate(classes) if i == classes.index(x)]
c = max(setclasses, key = classes.count)
listofrule = [n for n in branch if n.split_rule]
rules_per_class[c].append(listofrule)
return rules_per_class
def is_class(self, feat, c):
predicted_class = []
rules_for_class = self.rules[c]
#pc = [True for _ in range(len(rules_for_class))]
isclass = False
for i, srules in enumerate(rules_for_class):
fitrule = True
for rule in srules:
f1 = feat[rule["index"]]
f2 = feat[rule["index"]+1]
condition = f1 == rule["features"][0] and f2 == rule["features"][1]
#pc[i] = pc[i] and condition == rule["condition"]
fitrule = fitrule and condition == rule["conditions"]
isclass = isclass or fitrule
return isclass
def inclusive_branch(self):
leaves = self.get_leaves()
branches = [(l.classes, self.get_branch(l)) for l in leaves]
inclusive_branches = []
for c, branch in branches:
#print(c)
condition = True
for node in branch:
if node.split_rule:
condition = condition and node.split_rule["conditions"]
if condition == False:
break
if condition == True:
#inclusive_branch = branch
inclusive_branches.append(branch)
return inclusive_branches
def predict(self, feat):
predicted_class = []
for c in range(len(self.rules)):
ic = self.is_class(feat, c)
predicted_class.append(ic)
return predicted_class
def get_root(self):
for node in self.tree:
if node.id == node.parent:
return node
def get_parent(self, id):
for node in self.tree:
if node.id == id:
return node
def get_childrens(self, id):
childrens = []
for node in self.tree:
if not node == self.root and node.parent == id:
childrens.append(node)
return childrens
def get_branch(self, leaf):
branch = [leaf]
node = leaf
while not node == self.root :
node = self.get_parent(node.parent)
branch.append(node)
return branch
def get_leaves(self):
leaves = []
for node in self.tree:
if node.gini == 0:
leaves.append(node)
else:
childrens = self.get_childrens(node.id)
if len(childrens) == 0:
leaves.append(node)
return leaves
class condition_tree():
def __init__(self, nclasses=2, nfeat=2, labels=None, iteration_max=10000, epsilon = 1e-6):
self.nclasses = nclasses
self.nfeat = nfeat
if labels:
self.labels = labels
else:
self.labels = list(range(nfeat))
self.tree = []
self.queue = []
self.rules = []
self.root = None
self.epsilon = epsilon
self.iteration_max = iteration_max
def split(self, node):
features = node.features
classes = node.classes
values = node.values
parent = node.parent
gini_orig = node.gini
split_rule_true = []
split_rule_false = []
classes_true = []
classes_false = []
features_true = []
features_false = []
values_true = []
values_false = []
gini_true = 0
gini_false = 0
N = len(classes)
gain_gini = 0
best_cond = []
features_with_anomaly = [f for f,c in zip(features, classes) if c != 0 ]
values_with_anomaly = [v for v,c in zip(values, classes) if c != 0 ]
#print(len(values_with_anomaly))
for cond in list_of_possible_conditions(values_with_anomaly):
split_true = [c for v, c in zip(values, classes) if checkcondition( v, cond ) ]
split_false = [c for v, c in zip(values, classes) if not checkcondition( v, cond) ]
g_true = gini_impurity(split_true, self.nclasses)
g_false = gini_impurity(split_false, self.nclasses)
g = ( g_true * (len(split_true)/N) + g_false * (len(split_false)/N) )
gain = gini_orig - g
#print(cond, gain, end="\r")
if gain > gain_gini :
gain_gini = gain
gini_true = g_true
gini_false = g_false
best_cond = cond
split_rule_true = { "features":cond, "conditions": True, "rule" : str(cond) }
split_rule_false = { "features":cond, "conditions": False, "rule" : "not("+ str(cond) + ")" }
classes_true = split_true
classes_false = split_false
values_true = [v for v, c in zip(values, classes) if checkcondition( v, cond ) ]
values_false = [v for v, c in zip(values, classes) if not checkcondition( v, cond ) ]
features_true = [f for f, v, c in zip(features, values, classes) if checkcondition( v, cond ) ]
features_false = [f for f, v, c in zip(features, values, classes) if not checkcondition( v, cond ) ]
node_true = node_tree(features_true, values_true, classes_true, gini_true, node.id, split_rule_true)
node_false = node_tree(features_false, values_false, classes_false, gini_false, node.id, split_rule_false)
return node_true, node_false, gain_gini
def fit(self, features, values, classes):
self.features = features
self.classes = classes
self.values = values
gini = gini_impurity(classes, self.nclasses)
root = node_tree(features, values, classes, gini, 0, None)
root.set_parent(root.id)
self.root = root
self.tree = [ root ]
self.queue = [ root ]
n = 0
index = 0
while not len(self.queue) == 0 and n < self.iteration_max:
node = self.queue.pop(0)
node_true, node_false, gain_gini = self.split(node)
#print(gain_gini, [x for i, x in enumerate(node_true.classes) if i == node_true.classes.index(x)], [x for i, x in enumerate(node_false.classes) if i == node_false.classes.index(x)])
if len(node_true.classes)>0:
self.tree.append( node_true )
if len(node_false.classes)>0:
self.tree.append( node_false )
if gain_gini > self.epsilon:
if node_true.gini > self.epsilon and len(node_true.classes) >0:
self.queue.append(node_true)
if node_false.gini > self.epsilon and len(node_false.classes) > 0:
self.queue.append(node_false)
n += 1
index += 1
self.rules = self.rules_per_class()
def rules_per_class(self):
leaves = self.get_leaves()
branches = [(l.classes, self.get_branch(l)) for l in leaves]
rules_per_class = [[] for _ in range(self.nclasses)]
b = []
for i, (classes, branch) in enumerate(branches):
if not len(classes) == 0:
setclasses =[x for i, x in enumerate(classes) if i == classes.index(x)]
c = max( setclasses, key = classes.count)
listofrule = [ (len(n.classes), n.split_rule, n.id) for n in branch if n.split_rule]
#listofrule = [ (n.split_rule) for n in branch if n.split_rule]
rules_per_class[c].append(listofrule)
return rules_per_class
def conditions(self):
leaves = self.get_leaves()
branches = [(l.classes, self.get_branch(l)) for l in leaves]
rules_per_class = [[] for _ in range(self.nclasses)]
for i, (classes, branch) in enumerate(branches):
if not len(classes) == 0:
setclasses =[x for i, x in enumerate(classes) if i == classes.index(x)]
c = max(setclasses, key = classes.count)
listofrule = [n for n in branch if n.split_rule]
rules_per_class[c].append(listofrule)
return rules_per_class
def is_class(self, feat, c):
predicted_class = []
rules_for_class = self.rules[c]
#pc = [True for _ in range(len(rules_for_class))]
isclass = False
for i, srules in enumerate(rules_for_class):
fitrule = True
for rule in srules:
f1 = feat[rule["index"]]
f2 = feat[rule["index"]+1]
condition = f1 == rule["features"][0] and f2 == rule["features"][1]
#pc[i] = pc[i] and condition == rule["condition"]
fitrule = fitrule and condition == rule["conditions"]
isclass = isclass or fitrule
return isclass
def inclusive_branch(self):
leaves = self.get_leaves()
branches = [(l.classes, self.get_branch(l)) for l in leaves]
inclusive_branches = []
for c, branch in branches:
#print(c)
condition = True
for node in branch:
if node.split_rule:
condition = condition and node.split_rule["conditions"]
if condition == False:
break
if condition == True:
#inclusive_branch = branch
inclusive_branches.append(branch)
return inclusive_branches
def predict(self, feat):
predicted_class = []
for c in range(len(self.rules)):
ic = self.is_class(feat, c)
predicted_class.append(ic)
return predicted_class
def get_root(self):
for node in self.tree:
if node.id == node.parent:
return node
def get_parent(self, id):
for node in self.tree:
if node.id == id:
return node
def get_childrens(self, id):
childrens = []
for node in self.tree:
if not node == self.root and node.parent == id:
childrens.append(node)
return childrens
def get_branch(self, leaf):
branch = [leaf]
node = leaf
while not node == self.root :
node = self.get_parent(node.parent)
branch.append(node)
return branch
def get_leaves(self):
leaves = []
for node in self.tree:
if node.gini == 0:
leaves.append(node)
else:
childrens = self.get_childrens(node.id)
if len(childrens) == 0:
leaves.append(node)
return leaves
class inclusive_composition_tree():
def __init__(self, nclasses=2, nfeat=2, labels=None, iteration_max=10, epsilon = 1e-6):
self.trees = []
self.nclasses = nclasses
self.nfeat = nfeat
self.labels = labels
self.iteration_max = iteration_max
self.epsilon = epsilon
self.features = []
self.classes = []
self.inclusive_branches = []
def fit(self, features, classes):
self.features = features
self.classes = classes
feat_ = self.features
class_ = self.classes
n=0
while len(feat_) > 0 and n < self.iteration_max:
print(n , len(feat_), list(set(class_)) )
compotree = composition_tree(self.nclasses, self.nfeat, self.labels)
compotree.fit(feat_, class_)
inclusive_branch = compotree.inclusive_branch()[0]
feat_ib = inclusive_branch[0].features
class_ib = inclusive_branch[0].classes
self.inclusive_branches.append(inclusive_branch)
self.trees.append(compotree)
c = list(set(class_ib))
print(" ", c, [n.split_rule["rule"] for n in inclusive_branch if n.split_rule ])
print(" ", feat_ib, class_ib)
feat_ = [f for f in feat_ if not f in feat_ib]
class_ = [c for (c,f) in zip(class_, feat_) if not f in feat_ib]
n += 1
### MAIN ###
def main(args):
labels=["N", "A", "B", "PP", "PN"]
nlabels = len(labels)
nclasses = 5
nfeatures = 4
cl = [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 2, 2, 3, 3, 3, 4]
ft = [["A","A","A","A"],["N","N","N","N"],["N","A","A","N"],["N","N","N","N"],["N","N","N","N"],["N","N","N","N"],["N","N","N","N"],["A","A","A","A"],["N","N","N","N"],["N","N","N","N"],["N","A","A","N"],["A","A","A","A"],["A","B","B","A"],["A","B","B","A"],["A","B","B","A"],["N","PN","N","N"],["PN","PP","PN","N"],["N","PN","PP","PN"],["PP","PN","N","N"],["N","PP","PN","N"],["N","N","PP","PN"],["N","PP","N","N"]]
c = list(zip(ft, cl))
random.shuffle(c)
ft, cl = zip(*c)
compotree = composition_tree(nclasses, nfeatures, labels)
compotree.fit(ft, cl)
#root = compotree.get_root()
#print("root id", root.id)
#print("children", [c.dict() for c in compotree.get_childrens(root.id)])
compositions = compotree.composition()
#print(compositions)
#leaves = compotree.get_leaves()
#for leaf in leaves:
# print(leaf.id)
#
#test = [[] for _ in range(nclasses)]
#
#branches = [ (l.classes, compotree.get_branch(l)) for l in leaves]
#for classes, branch in branches:
# c = max(set(classes), key = classes.count)
# rules = [n.split_rule["rule"] for n in branch if n.split_rule]
# print(c, rules )
# test[c].append(rules)
# print(test)
# print()
for i, rpc in enumerate(compositions):
print("class", i)
for j, rules in enumerate(rpc):
print(rules)
print("or" if j < len(rpc)-1 else "")
print()
#class_0 = compotree.is_class(["N","PP","PN","N"], 0)
#print(class_0)
#class_1 = compotree.is_class(["N","PP","PN","N"], 1)
#print(class_1)
#class_2 = compotree.is_class(["N","PP","PN","N"], 2)
#print(class_2)
#class_3 = compotree.is_class(["N","PP","PN","N"], 3)
#print(class_3)
#class_4 = compotree.is_class(["N","PP","PN","N"], 4)
#print(class_4)
if __name__ == '__main__':
parser = argparse.ArgumentParser(description="Composition-based desicion tree utilities.")
parser.add_argument("-d", "--dataset",
dest="dataset",
type=str,
help="dataset csv file",)
args = parser.parse_args()
main(args)