From 66428adb1fdca39c6718cc1510c28d4d4b11cd0b Mon Sep 17 00:00:00 2001 From: Stefano Braghin <527806+stefano81@users.noreply.github.com> Date: Mon, 28 Sep 2026 12:34:30 +0100 Subject: [PATCH 1/9] fix: missing-call-to-init Signed-off-by: Stefano Braghin <527806+stefano81@users.noreply.github.com> --- pyproject.toml | 2 +- src/risk_assessment/classification/unstructured/nltk.py | 3 ++- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index fe03561..4679f1f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -48,7 +48,7 @@ dependencies = [ "word2number==1.1", # To fix dependabot - "setuptools>=83.0.0", + # "setuptools>=83.0.0", ] [project.optional-dependencies] rest = [ diff --git a/src/risk_assessment/classification/unstructured/nltk.py b/src/risk_assessment/classification/unstructured/nltk.py index 594a31e..a378783 100644 --- a/src/risk_assessment/classification/unstructured/nltk.py +++ b/src/risk_assessment/classification/unstructured/nltk.py @@ -8,7 +8,8 @@ class NLTKPoSTagger(EntityExtractor): - def __init__(self, tokenizer: TokenizerI, tagger: TaggerI) -> None: + def __init__(self, tokenizer: TokenizerI, tagger: TaggerI, type_mapping: dict[str, str] = {}) -> None: + super().__init__(type_mapping) self.tokenizer = tokenizer self.tagger = tagger From 3dfa05901f84ec058138b7e86cb1a173cabd0b8a Mon Sep 17 00:00:00 2001 From: Stefano Braghin <527806+stefano81@users.noreply.github.com> Date: Mon, 28 Sep 2026 12:47:23 +0100 Subject: [PATCH 2/9] fix: Inconsistent equality and hashing Signed-off-by: Stefano Braghin <527806+stefano81@users.noreply.github.com> --- .../anonymization/optimal_lattice_anonymization.py | 8 +++++++- tests/anonymization/test_anonymity_checker.py | 2 -- 2 files changed, 7 insertions(+), 3 deletions(-) diff --git a/src/risk_assessment/anonymization/optimal_lattice_anonymization.py b/src/risk_assessment/anonymization/optimal_lattice_anonymization.py index 28003a8..1cb6325 100644 --- a/src/risk_assessment/anonymization/optimal_lattice_anonymization.py +++ b/src/risk_assessment/anonymization/optimal_lattice_anonymization.py @@ -148,7 +148,7 @@ def _check_constraints(self, dataset: DataFrame) -> bool: return True -@dataclass(eq=True) +@dataclass class LatticeNode: """A single node in the generalization lattice. @@ -189,6 +189,12 @@ def __str__(self) -> str: def __hash__(self) -> int: return hash(str(self.values)) + def __eq__(self, other: Any) -> bool: + if isinstance(other, LatticeNode): + return self.__hash__() == other.__hash__() + + return False + def _calculate_product(levels: list[list[int]]) -> list[list[int]]: product_result: list[list[int]] = [] diff --git a/tests/anonymization/test_anonymity_checker.py b/tests/anonymization/test_anonymity_checker.py index 33e353a..ac1b838 100644 --- a/tests/anonymization/test_anonymity_checker.py +++ b/tests/anonymization/test_anonymity_checker.py @@ -1,8 +1,6 @@ -import importlib.resources import math import pandas as pd -import pytest from risk_assessment.anonymization import KAnonymity, PrivacyConstraint from risk_assessment.anonymization.optimal_lattice_anonymization import AnonymityChecker, LatticeNode From 7d079645d914e8b1b25e7a82626ad1b8343b2ca4 Mon Sep 17 00:00:00 2001 From: Stefano Braghin <527806+stefano81@users.noreply.github.com> Date: Mon, 28 Sep 2026 12:50:50 +0100 Subject: [PATCH 3/9] fix: format and type issues Signed-off-by: Stefano Braghin <527806+stefano81@users.noreply.github.com> --- src/risk_assessment/classification/unstructured/nltk.py | 4 ++-- src/risk_assessment/readi/text_tokenizer.py | 1 + tests/anonymization/test_privacy_constraints.py | 1 - 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/src/risk_assessment/classification/unstructured/nltk.py b/src/risk_assessment/classification/unstructured/nltk.py index a378783..ead93b5 100644 --- a/src/risk_assessment/classification/unstructured/nltk.py +++ b/src/risk_assessment/classification/unstructured/nltk.py @@ -8,8 +8,8 @@ class NLTKPoSTagger(EntityExtractor): - def __init__(self, tokenizer: TokenizerI, tagger: TaggerI, type_mapping: dict[str, str] = {}) -> None: - super().__init__(type_mapping) + def __init__(self, tokenizer: TokenizerI, tagger: TaggerI, type_mapping: dict[str, str] | None = None) -> None: + super().__init__(type_mapping if type_mapping is not None else {}) self.tokenizer = tokenizer self.tagger = tagger diff --git a/src/risk_assessment/readi/text_tokenizer.py b/src/risk_assessment/readi/text_tokenizer.py index 1886967..ff1a30a 100644 --- a/src/risk_assessment/readi/text_tokenizer.py +++ b/src/risk_assessment/readi/text_tokenizer.py @@ -158,6 +158,7 @@ def __init__(self, model_name: str = "FacebookAI/roberta-base", device: str = "c ) def span_tokenize(self, text: str) -> list[tuple[int, int]]: + assert self.tokenizer is not None tokenized_text = self.tokenizer(text) num_of_tokens = len(tokenized_text["input_ids"]) token_spans: list[tuple[int, int]] = [] diff --git a/tests/anonymization/test_privacy_constraints.py b/tests/anonymization/test_privacy_constraints.py index 6a960aa..f10bb22 100644 --- a/tests/anonymization/test_privacy_constraints.py +++ b/tests/anonymization/test_privacy_constraints.py @@ -6,7 +6,6 @@ from risk_assessment.anonymization import DistinctLDiversity, EntropyLDiversity, KAnonymity, TCloseness from risk_assessment.metrics.informationloss import ColumnClass, ColumnInformation, ColumnType from risk_assessment.utility import extract_histograms -from risk_assessment.utility.hierarchy import MaterializedHierarchy def test_kanonymity(): From 0d8a0a51f255febba690014e995fd11a0595c7d5 Mon Sep 17 00:00:00 2001 From: Stefano Braghin <527806+stefano81@users.noreply.github.com> Date: Mon, 28 Sep 2026 12:55:14 +0100 Subject: [PATCH 4/9] fix: format and type issues Signed-off-by: Stefano Braghin <527806+stefano81@users.noreply.github.com> --- src/risk_assessment/anonymization/mondrian.py | 5 ++--- src/risk_assessment/metrics/informationloss/__init__.py | 6 +++--- 2 files changed, 5 insertions(+), 6 deletions(-) diff --git a/src/risk_assessment/anonymization/mondrian.py b/src/risk_assessment/anonymization/mondrian.py index 3c45ac0..d9ad30d 100644 --- a/src/risk_assessment/anonymization/mondrian.py +++ b/src/risk_assessment/anonymization/mondrian.py @@ -29,6 +29,7 @@ from __future__ import annotations +from contextlib import suppress from dataclasses import dataclass from enum import Enum, auto from typing import Any @@ -112,12 +113,10 @@ def _find_common_ancestor(values: npt.NDArray[Any], hierarchy: GeneralizationHie node = node.parent else: while node is not None: - try: + with suppress(ValueError): index = ancestors.index(node) ancestors = ancestors[index:] break - except ValueError: - pass node = node.parent if ancestors is None: diff --git a/src/risk_assessment/metrics/informationloss/__init__.py b/src/risk_assessment/metrics/informationloss/__init__.py index 78da112..af5bb40 100644 --- a/src/risk_assessment/metrics/informationloss/__init__.py +++ b/src/risk_assessment/metrics/informationloss/__init__.py @@ -199,8 +199,8 @@ def _get_loss_categorical(value: Any, column_information: ColumnInformation) -> def _report_for_column_without_transformation_level( original: Series | DataFrame, anonymized: Series | DataFrame, column_information: ColumnInformation ) -> float: - # if column_information.column_class != ColumnClass.CATEGORICAL: - # raise ValueError("Cannot process non categorical colums") + if column_information.column_class != ColumnClass.CATEGORICAL: + raise ValueError("Cannot process non categorical colums") weight = column_information.weight precision = 0.0 @@ -241,7 +241,7 @@ def _categorical_precision_report_per_quasi_column( if c_i.column_type == ColumnType.QUASI: report: float = _report_for_column( original.iloc[:, index], anonymized.iloc[:, index], column_information[index], transformation_levels - ) # for index, c_i in enumerate(column_information) if c_i.column_type == ColumnType.QUASI + ) results.append(report) return results From 078d34d0b9e5131fde39303fc0c0f2241b30c881 Mon Sep 17 00:00:00 2001 From: Stefano Braghin <527806+stefano81@users.noreply.github.com> Date: Mon, 28 Sep 2026 15:41:09 +0100 Subject: [PATCH 5/9] fix: add all dependencies for ty and ruff Signed-off-by: Stefano Braghin <527806+stefano81@users.noreply.github.com> --- .github/workflows/ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 67ad87e..77a4385 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -28,7 +28,7 @@ jobs: enable-cache: true - name: Install dependencies - run: uv sync --extra dev + run: uv sync --all-extras - name: Run ty type checking run: uv run ty check From 18011a03d1c154fb6d5c3631a7986111be03581f Mon Sep 17 00:00:00 2001 From: Stefano Braghin <527806+stefano81@users.noreply.github.com> Date: Mon, 28 Sep 2026 22:57:28 +0100 Subject: [PATCH 6/9] fix: code Signed-off-by: Stefano Braghin <527806+stefano81@users.noreply.github.com> --- tests/classification/unstructured/test_presidio.py | 5 ++++- uv.lock | 9 +++++---- 2 files changed, 9 insertions(+), 5 deletions(-) diff --git a/tests/classification/unstructured/test_presidio.py b/tests/classification/unstructured/test_presidio.py index ea2a327..68b9898 100644 --- a/tests/classification/unstructured/test_presidio.py +++ b/tests/classification/unstructured/test_presidio.py @@ -76,7 +76,10 @@ def _make_extractor(**kwargs) -> PresidioEntityExtractor: return PresidioEntityExtractor(type_mapping=TYPE_MAPPING, **kwargs) -def _stub_result(entity_type: str, start: int, end: int, score: float = 0.85) -> _RecognizerResult: +RecognizerResult = _RecognizerResult + + +def _stub_result(entity_type: str, start: int, end: int, score: float = 0.85) -> RecognizerResult: return _RecognizerResult(entity_type=entity_type, start=start, end=end, score=score) diff 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marker = "python_full_version >= '3.12'" }, { name = "numpy" }, { name = "platformdirs" }, { name = "protobuf" }, From 3d1dbd7053ccfe00b15ccdc16cb15a337b95602c Mon Sep 17 00:00:00 2001 From: Stefano Braghin <527806+stefano81@users.noreply.github.com> Date: Mon, 28 Sep 2026 23:05:38 +0100 Subject: [PATCH 7/9] fix: dependency Signed-off-by: Stefano Braghin <527806+stefano81@users.noreply.github.com> --- tests/classification/unstructured/test_presidio.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tests/classification/unstructured/test_presidio.py b/tests/classification/unstructured/test_presidio.py index 68b9898..b592990 100644 --- a/tests/classification/unstructured/test_presidio.py +++ b/tests/classification/unstructured/test_presidio.py @@ -258,7 +258,7 @@ def test_empty_type_mapping_returns_raw_types(): def test_build_entity_returns_entity_dataclass(): extractor = _make_extractor() result = _stub_result("PERSON", 3, 11, score=0.88) - entity = extractor._build_entity(result) + entity = extractor._build_entity(result) # ty: ignore[invalid-argument-type] assert isinstance(entity, Entity) assert entity.start == 3 assert entity.end == 11 @@ -270,7 +270,7 @@ def test_build_entity_returns_entity_dataclass(): def test_build_entity_score_zero(): extractor = _make_extractor() result = _stub_result("PERSON", 0, 4, score=0.0) - entity = extractor._build_entity(result) + entity = extractor._build_entity(result) # ty: ignore[invalid-argument-type] assert entity.confidence == pytest.approx(0.0) From 795b943ce25caf970a911dc91c89c34bfd12bea3 Mon Sep 17 00:00:00 2001 From: Stefano Braghin <527806+stefano81@users.noreply.github.com> Date: Mon, 28 Sep 2026 23:08:01 +0100 Subject: [PATCH 8/9] fix: bind most of the CI operations to 3.11 Signed-off-by: Stefano Braghin <527806+stefano81@users.noreply.github.com> --- .github/workflows/ci.yml | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/ci.yml 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