Interested in autohic. tested the singularity version, but it has error in the log. It will call bwa which call specific version of GLIBCs. However the GLIBC is missing in the singularity. The possible cause is that these libs are from old Ubuntu on which the containerized bwa compile is depended.
error which may come form running the juicer step:
bwa_index.log
bwa: /lib/x86_64-linux-gnu/libm.so.6: version GLIBC_2.29' not found (required by bwa) bwa: /lib/x86_64-linux-gnu/libc.so.6: version GLIBC_2.33' not found (required by bwa)
bwa: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.34' not found (required by bwa)
Could you please provide the .def file for building the singularity? I can help to update and rebuild a new singularity .sif in a new Ubuntu Linux system. The one in your google drive is built from Ubuntu 18, which is too old.
In addition, try to install autohic via conda, which failed because Conda can not find compatible dependences.
Thanks.
Interested in autohic. tested the singularity version, but it has error in the log. It will call bwa which call specific version of GLIBCs. However the GLIBC is missing in the singularity. The possible cause is that these libs are from old Ubuntu on which the containerized bwa compile is depended.
error which may come form running the juicer step:
bwa_index.log
bwa: /lib/x86_64-linux-gnu/libm.so.6: version
GLIBC_2.29' not found (required by bwa) bwa: /lib/x86_64-linux-gnu/libc.so.6: versionGLIBC_2.33' not found (required by bwa)bwa: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.34' not found (required by bwa)
Could you please provide the .def file for building the singularity? I can help to update and rebuild a new singularity .sif in a new Ubuntu Linux system. The one in your google drive is built from Ubuntu 18, which is too old.
In addition, try to install autohic via conda, which failed because Conda can not find compatible dependences.
Thanks.