index issue?

[wym0072003]

Hi,

I am making plot using hic and chr.txt from 3D-DNA pipeline.

The plot code is : plothic -hic input.hic -chr chr_length.txt -r 500000 -order

However, I got this issue:
ValueError: all the input array dimensions except for the concatenation axis must match exactly, but along dimension 0, the array at index 0 has size 1282 and the array at index 1 has size 1 .

Can you please help with this?

My chr_length.txt content is:
1 516992682 1
2 904038844 2
3 1225632928 3
4 1528112024 4
5 1782947734 5
6 1909606522 6
7 2031469386 7
8 2151619528 8
9 2251550034 9
10 2342748636 10
11 2431377486 11
12 2500666322 12
13 2563131868 13

Thanks in advance!

Best,

Yiming

[Jwindler]

Input file: chr.tx (3 columns as follows, use "\t" as separator)
This file is used for heatmap labeling. The first column is the name of the chromosome.
The second column is the length of the chromosome (this length is the length of the hic file in Juicebox and can be manually determined from Juicebox).
The third column is the order in which the chromosomes are placed, which is used to customize the arrangement of chromosomes (for example, from max to min).

Please refer to the prepared documents above. If permitted, you can upload the .hic file for my testing.