AlphaPulldown v2.6.1

[DimaMolod]

What's Changed

• Added metadata to AlphaFold3 feature JSON files while preserving compatibility with vanilla AlphaFold3.
• Preserved metadata when the AlphaFold3 backend uses native AlphaFold3, AlphaPulldown-generated AlphaFold3, AlphaFold2, or mixed feature inputs.
• Added structured metadata to ModelCIF output, including the software, databases, parameters, and input information actually used.
• Prevented local paths, internal flags, unused databases, and unused binaries from appearing in ModelCIF files.
• Corrected metadata for custom PDB mmCIF and RNAcentral database mirrors.
• Added compiled-AlphaFold3 compatibility checks and end-to-end tests covering feature generation, GPU inference, ModelCIF postprocessing, and mixed inputs.
• Added --storage_mode presets for reducing AlphaFold2 and AlphaFold3 prediction output size by @DimaMolod.
• Fixed inconsistent homooligomer naming by @Qrouger.
• Added and verified support for NVIDIA Blackwell GPUs.
• Fixed several compatibility and robustness issues.

Full Changelog: 2.5.0...2.6.1

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This discussion was created from the release AlphaPulldown v2.6.1.