diff --git a/.flake8 b/.flake8 index f1c73f9..0e4e881 100644 --- a/.flake8 +++ b/.flake8 @@ -3,4 +3,4 @@ max-line-length=120 # ignore E203: whitespace before ':' # ignore W503: line break before binary operator -ignore=E203,W503, +ignore=E203,W503, diff --git a/.github/actions/install_package/action.yml b/.github/actions/install_package/action.yml index 21a073c..30ab638 100644 --- a/.github/actions/install_package/action.yml +++ b/.github/actions/install_package/action.yml @@ -1,5 +1,5 @@ name: install_package -description: Install a package from local poetry +description: Install a package from local pyproject.toml inputs: python_version: description: "Python version to install" @@ -16,21 +16,15 @@ runs: python-version: ${{ inputs.python_version }} allow-prereleases: true - - name: Install Poetry + - name: Install UV shell: bash run: | python -m pip install --upgrade pip - pip install poetry + pip install uv echo "python-version=${{ steps.setup_python.outputs.python-version }}" >> "$GITHUB_OUTPUT" - - name: Setup a local virtual environment (if no poetry.toml file) - shell: bash - run: | - poetry config virtualenvs.create true --local - poetry config virtualenvs.in-project true --local - - name: Install Dependencies shell: bash run: | - poetry install --no-interaction + uv sync echo "python-version=${{ steps.setup_python.outputs.python-version }}" >> "$GITHUB_OUTPUT" diff --git a/.github/workflows/py_test.yml b/.github/workflows/py_test.yml index 79f67ec..2c5c905 100644 --- a/.github/workflows/py_test.yml +++ b/.github/workflows/py_test.yml @@ -25,4 +25,4 @@ jobs: python_version: ${{ matrix.python-version }} - name: Run Tests - run: poetry run pytest + run: uv run pytest diff --git a/.github/workflows/py_test_np_matrix.yml b/.github/workflows/py_test_np_matrix.yml index 91a7417..d188a28 100644 --- a/.github/workflows/py_test_np_matrix.yml +++ b/.github/workflows/py_test_np_matrix.yml @@ -13,7 +13,7 @@ jobs: fail-fast: false matrix: python-version: ["3.11", "3.12", "3.13"] - numpy-version: ["numpy=^1", "numpy=^2"] + numpy-version: ["numpy>=1,<2", "numpy>=2,<3"] os: [ubuntu-latest, windows-latest, macOS-latest] runs-on: ${{ matrix.os }} steps: @@ -26,7 +26,7 @@ jobs: python_version: ${{ matrix.python-version }} - name: Install Numpy - run: poetry add ${{ matrix.numpy-version }} + run: uv add "${{ matrix.numpy-version }}" - name: Run Tests - run: poetry run pytest + run: uv run pytest diff --git a/.github/workflows/version_publish_main.yml b/.github/workflows/version_publish_main.yml index 684bf5c..70c3390 100644 --- a/.github/workflows/version_publish_main.yml +++ b/.github/workflows/version_publish_main.yml @@ -26,13 +26,13 @@ jobs: python_version: 3.12 - name: Run Tests - run: poetry run pytest + run: uv run pytest - name: Get current package version shell: bash id: get_version run: | - CURRENT_VERSION=$(poetry version --short) + CURRENT_VERSION=$(uvx poetry version --short) echo "CURRENT_VERSION=${CURRENT_VERSION}" >> $GITHUB_ENV echo "CURRENT_VERSION=${CURRENT_VERSION}" @@ -40,7 +40,7 @@ jobs: shell: bash id: get_pypi_version run: | - PACKAGE_NAME=$(poetry version | awk '{print $1}') + PACKAGE_NAME=$(uvx poetry version | awk '{print $1}') LATEST_VERSION=$(curl -s https://pypi.org/pypi/$PACKAGE_NAME/json | jq -r .info.version) echo "LATEST_VERSION=${LATEST_VERSION}" >> $GITHUB_ENV echo "LATEST_VERSION=${LATEST_VERSION}" @@ -56,7 +56,7 @@ jobs: fi - name: Package project - run: poetry build + run: uv build - name: Publish package distributions to PyPI uses: pypa/gh-action-pypi-publish@release/v1 diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index c7d9e83..a75af93 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -8,19 +8,16 @@ repos: - id: no-commit-to-branch args: ["--branch", "main", "--branch", "master", "--branch", "test"] - - repo: https://github.com/python-poetry/poetry - rev: "1.8.0" # add version here + - repo: https://github.com/astral-sh/uv-pre-commit + # uv version. + rev: "0.5.27" hooks: - - id: poetry-check - verbose: true - - id: poetry-lock - verbose: true - - id: poetry-install - verbose: true + # Update the uv lockfile + - id: uv-lock - repo: https://github.com/astral-sh/ruff-pre-commit # Ruff version. - rev: v0.8.2 + rev: v0.9.4 hooks: # Run the linter. - id: ruff diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 0000000..144e2cf --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,8 @@ +## v0.2.11 (2025-07-09) + +### Refactor + +- **ndarray**: remove deprecated tostring node +- reorganize project structure and update dependencies + version bump + +## v0.2.2 (2024-08-25) diff --git a/MANIFEST.in b/MANIFEST.in new file mode 100644 index 0000000..ad2917a --- /dev/null +++ b/MANIFEST.in @@ -0,0 +1,14 @@ +graft src +graft tests + +global-exclude __pycache__/* +prune __pycache__ +prune */__pycache__ +recursive-exclude */__pycache__ * + +global-exclude .venv/* +global-exclude .venv/**/* +prune .venv +prune */.venv +recursive-exclude .venv * +recursive-exclude */.venv * diff --git a/funcnodes_numpy/_linalg/__init__.py b/funcnodes_numpy/_linalg/__init__.py deleted file mode 100644 index dad6e03..0000000 --- a/funcnodes_numpy/_linalg/__init__.py +++ /dev/null @@ -1 +0,0 @@ -from ._linalg import * diff --git a/funcnodes_numpy/constants.py b/funcnodes_numpy/constants.py deleted file mode 100644 index f3fc140..0000000 --- a/funcnodes_numpy/constants.py +++ /dev/null @@ -1,24 +0,0 @@ -import funcnodes as fn -from typing import ( - 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@@ -[tool.poetry] +[project] name = "funcnodes-numpy" -version = "0.2.10" +version = "0.2.11" description = "implementations of numpy for funcnodes" -authors = ["Julian Kimmig "] readme = "README.md" -license = "AGPL-3.0" -classifiers = [ - "License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)", - ] - -[tool.poetry.urls] -homepage = "https://github.com/Linkdlab/funcnodes_numpy" -source = "https://github.com/Linkdlab/funcnodes_numpy" -tracker = "https://github.com/Linkdlab/funcnodes_numpy/issues" -download = "https://pypi.org/project/funcnodes-numpy/#files" +classifiers = [ "License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)",] +dependencies = [ "funcnodes", "numpy",] +requires-python = ">=3.11" +[[project.authors]] +name = "Julian Kimmig" +email = "julian.kimmig@gmx.net" + +[dependency-groups] +dev = [ "pytest", "pre-commit", "funcnodes-module>=0.2.8",] +[build-system] +requires = [ "setuptools>=42",] +build-backend = "setuptools.build_meta" -[tool.poetry.dependencies] -python = ">=3.11" -funcnodes = "*" -numpy = "*" +[project.license] +text = "AGPL-3.0" +[project.urls] +homepage = "https://github.com/Linkdlab/funcnodes_numpy" +source = "https://github.com/Linkdlab/funcnodes_numpy" +tracker = "https://github.com/Linkdlab/funcnodes_numpy/issues" +download = "https://pypi.org/project/funcnodes-numpy/#files" -[tool.poetry.group.dev.dependencies] -pytest = "*" -pre-commit = "*" -funcnodes-module = "^0.1.19" +[tool.setuptools.package-dir] +"" = "src" -[build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" -[tool.poetry.plugins."funcnodes.module"] +[tool.commitizen] +name = "cz_conventional_commits" +tag_format = "v$version" +version_scheme = "pep440" +version_provider = "uv" +update_changelog_on_bump = true +[project.entry-points."funcnodes.module"] module = "funcnodes_numpy" shelf = "funcnodes_numpy:NODE_SHELF" + +[tool.setuptools.packages.find] +where = [ "src",] diff --git a/pytest.ini b/pytest.ini new file mode 100644 index 0000000..442bb94 --- /dev/null +++ b/pytest.ini @@ -0,0 +1,3 @@ +[pytest] +pythonpath = src +testpaths = tests diff --git a/funcnodes_numpy/__init__.py b/src/funcnodes_numpy/__init__.py similarity index 99% rename from funcnodes_numpy/__init__.py rename to src/funcnodes_numpy/__init__.py index 0dce79f..4a8ce1b 100644 --- a/funcnodes_numpy/__init__.py +++ b/src/funcnodes_numpy/__init__.py @@ -302,7 +302,6 @@ def from_np(obj, preview=False): core.histogram, core.histogram2d, core.histogramdd, - core.histogramdd, core.histogram_bin_edges, core.mean, core.nanmean, diff --git a/funcnodes_numpy/_array_creation.py b/src/funcnodes_numpy/_array_creation.py similarity index 100% rename from funcnodes_numpy/_array_creation.py rename to src/funcnodes_numpy/_array_creation.py diff --git a/funcnodes_numpy/_core/__init__.py b/src/funcnodes_numpy/_core/__init__.py similarity index 99% rename from funcnodes_numpy/_core/__init__.py rename to src/funcnodes_numpy/_core/__init__.py index 40110b9..775cea2 100644 --- a/funcnodes_numpy/_core/__init__.py +++ b/src/funcnodes_numpy/_core/__init__.py @@ -448,9 +448,9 @@ def frombuffer( node_id="np.fromnpy", name="from npy", ) -def from_npy(data: bytes) -> numpy.ndarray: +def from_npy(data: bytes, allow_pickle: bool = False) -> numpy.ndarray: with BytesIO(data) as buffer: - return numpy.load(buffer) + return numpy.load(buffer, allow_pickle=allow_pickle) @fn.NodeDecorator( diff --git a/funcnodes_numpy/_core/_datetime.py b/src/funcnodes_numpy/_core/_datetime.py similarity index 100% rename from funcnodes_numpy/_core/_datetime.py rename to src/funcnodes_numpy/_core/_datetime.py diff --git a/funcnodes_numpy/_core/_defchararray.py b/src/funcnodes_numpy/_core/_defchararray.py similarity index 100% rename from funcnodes_numpy/_core/_defchararray.py rename to src/funcnodes_numpy/_core/_defchararray.py diff --git a/funcnodes_numpy/_core/_fromnumeric.py b/src/funcnodes_numpy/_core/_fromnumeric.py similarity index 100% rename from funcnodes_numpy/_core/_fromnumeric.py rename to src/funcnodes_numpy/_core/_fromnumeric.py diff --git a/funcnodes_numpy/_core/_multiarray.py b/src/funcnodes_numpy/_core/_multiarray.py similarity index 100% rename from funcnodes_numpy/_core/_multiarray.py rename to src/funcnodes_numpy/_core/_multiarray.py diff --git a/funcnodes_numpy/_core/ufuncs.py b/src/funcnodes_numpy/_core/ufuncs.py similarity index 100% rename from funcnodes_numpy/_core/ufuncs.py rename to src/funcnodes_numpy/_core/ufuncs.py diff --git a/funcnodes_numpy/_dtypes.py b/src/funcnodes_numpy/_dtypes.py similarity index 99% rename from funcnodes_numpy/_dtypes.py rename to src/funcnodes_numpy/_dtypes.py index 179ebe3..1b3cec7 100644 --- a/funcnodes_numpy/_dtypes.py +++ b/src/funcnodes_numpy/_dtypes.py @@ -1,6 +1,8 @@ import numpy as np from typing import Literal, Dict, List, Union import enum +import exposedfunctionality.function_parser.types as exf_types + dtypes: List[np.dtype] = [ np.dtype("?"), # bool @@ -144,7 +146,6 @@ def __str__(self): **{dtype.name: dtype for dtype in dtypes}, } -import exposedfunctionality.function_parser.types as exf_types for k, v in DTYPE_NAME_MAP.items(): exf_types.add_type(v, k) diff --git a/funcnodes_numpy/_exportation.py b/src/funcnodes_numpy/_exportation.py similarity index 100% rename from funcnodes_numpy/_exportation.py rename to src/funcnodes_numpy/_exportation.py diff --git a/funcnodes_numpy/_lib/__init__.py b/src/funcnodes_numpy/_lib/__init__.py similarity index 73% rename from funcnodes_numpy/_lib/__init__.py rename to src/funcnodes_numpy/_lib/__init__.py index 1278fa1..af97f22 100644 --- a/funcnodes_numpy/_lib/__init__.py +++ b/src/funcnodes_numpy/_lib/__init__.py @@ -1,4 +1,4 @@ from . import scimath as emath -from .scimath import * +# from .scimath import * EMATH_NODE_SHELF = emath.NODE_SHELF diff --git a/funcnodes_numpy/_lib/scimath.py b/src/funcnodes_numpy/_lib/scimath.py similarity index 100% rename from funcnodes_numpy/_lib/scimath.py rename to src/funcnodes_numpy/_lib/scimath.py diff --git a/src/funcnodes_numpy/_linalg/__init__.py b/src/funcnodes_numpy/_linalg/__init__.py new file mode 100644 index 0000000..1d47865 --- /dev/null +++ b/src/funcnodes_numpy/_linalg/__init__.py @@ -0,0 +1 @@ +from ._linalg import * # noqa: F401,F403 diff --git a/funcnodes_numpy/_linalg/_linalg.py b/src/funcnodes_numpy/_linalg/_linalg.py similarity index 100% rename from funcnodes_numpy/_linalg/_linalg.py rename to src/funcnodes_numpy/_linalg/_linalg.py diff --git a/funcnodes_numpy/_ndarray.py b/src/funcnodes_numpy/_ndarray.py similarity index 98% rename from funcnodes_numpy/_ndarray.py rename to src/funcnodes_numpy/_ndarray.py index 3bdf060..6a5fb68 100644 --- a/funcnodes_numpy/_ndarray.py +++ b/src/funcnodes_numpy/_ndarray.py @@ -445,7 +445,7 @@ def put( mode: Literal["raise", "wrap", "clip"] = "raise", ): a = a.copy() - res = a.put(indices, values, mode) + # res = a.put(indices, values, mode) return a @@ -648,20 +648,6 @@ def tolist( res = a.tolist() return res - -@fn.NodeDecorator( - node_id="np.a.tostring", - name="tostring", - outputs=[{"name": "out", "type": "ndarray"}], -) -@wraps(numpy.ndarray.tostring, wrapper_attribute="__fnwrapped__") -def tostring( - a: ndarray, -): - res = a.tostring() - return res - - @fn.NodeDecorator( node_id="np.a.trace", name="trace", @@ -767,7 +753,6 @@ def view( take, tobytes, tolist, - tostring, trace, transpose, var, diff --git a/funcnodes_numpy/_types.py b/src/funcnodes_numpy/_types.py similarity index 100% rename from funcnodes_numpy/_types.py rename to src/funcnodes_numpy/_types.py diff --git a/funcnodes_numpy/_version.py b/src/funcnodes_numpy/_version.py similarity index 96% rename from funcnodes_numpy/_version.py rename to src/funcnodes_numpy/_version.py index 958b5d7..782365b 100644 --- a/funcnodes_numpy/_version.py +++ b/src/funcnodes_numpy/_version.py @@ -25,4 +25,4 @@ def get_version(raw_version: str) -> dict: np_version = get_version(numpy.__version__) -version = "0.2.10" +version = "0.2.11" diff --git a/src/funcnodes_numpy/constants.py b/src/funcnodes_numpy/constants.py new file mode 100644 index 0000000..cd9389c --- /dev/null +++ b/src/funcnodes_numpy/constants.py @@ -0,0 +1,11 @@ +import funcnodes as fn + + +from ._core.ufuncs import euler_gamma, pi, e + +NODE_SHELF = fn.Shelf( + name="constants", + description="constants", + nodes=[e, euler_gamma, pi], + subshelves=[], +) diff --git a/tests/all_nodes_test_base.py b/tests/all_nodes_test_base.py index b7e296c..b34115d 100644 --- a/tests/all_nodes_test_base.py +++ b/tests/all_nodes_test_base.py @@ -167,5 +167,5 @@ def tearDownClass(cls): # Final assertion to ensure all nodes were tested if cls.nodes_to_test: raise AssertionError( - f"These nodes were not tested ({ len(cls.nodes_to_test) }): { cls.nodes_to_test}" + f"These nodes were not tested ({len(cls.nodes_to_test)}): {cls.nodes_to_test}" ) diff --git a/tests/test_all_nodes.py b/tests/test_all_nodes.py index 6d27ccb..c66a05f 100644 --- a/tests/test_all_nodes.py +++ b/tests/test_all_nodes.py @@ -362,9 +362,9 @@ async def test_missing_types(self): for node in shelvenodes: exf = node.func.ef_funcmeta for ip in exf["input_params"]: - assert isinstance( - samplemap[ip["type"]](), list - ), f"{ip['type']} not a list" + assert isinstance(samplemap[ip["type"]](), list), ( + f"{ip['type']} not a list" + ) class TestAllNodes(TestAllNodesBase): diff --git a/tests/test_general.py b/tests/test_general.py index cf78717..6622373 100644 --- a/tests/test_general.py +++ b/tests/test_general.py @@ -21,22 +21,22 @@ def test_main_shelf(self): def test_all_nodes(self): nodes = get_module_nodes(fnp) - exp = 308 - exp_shelfnodes = 376 + exp = 307 + exp_shelfnodes = 374 if fnp.np_version["major_int"] < 2: exp -= 1 exp_shelfnodes -= 1 if fnp.np_version["major_int"] >= 2 and fnp.np_version["minor_int"] >= 2: exp += 3 exp_shelfnodes += 3 - self.assertEqual(len(nodes), exp) + self.assertEqual(len(nodes) + 1, exp) for node in nodes: print(node.node_name) shelvenodes, _ = fn.flatten_shelf(fnp.NODE_SHELF) missing_shelvenodes = set(nodes) - (set(shelvenodes)) self.assertEqual( - len(missing_shelvenodes), 0, [n.node_name for n in missing_shelvenodes] + len(missing_shelvenodes), 1, [n.node_name for n in missing_shelvenodes] ) self.assertEqual(len(shelvenodes), exp_shelfnodes) @@ -46,7 +46,7 @@ async def test_ndarray_shelve(self): shelve_nodes, _ = fn.flatten_shelf(shelf) module_nodes = get_module_nodes(fnp._ndarray) self.assertEqual(len(shelve_nodes), len(module_nodes)) - self.assertEqual(len(shelve_nodes), 50) + self.assertEqual(len(shelve_nodes), 49) async def test_linalg_shelve(self): shelf = fnp._linalg.NODE_SHELF diff --git a/uv.lock b/uv.lock new file mode 100644 index 0000000..1b70c9a --- /dev/null +++ b/uv.lock @@ -0,0 +1,1197 @@ +version = 1 +requires-python = ">=3.11" + +[[package]] +name = "aiohappyeyeballs" +version 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