bidspm/.gitignore at main · MRI-Lab-Graz/bidspm · GitHub

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# Python environments
.bidspm/
venv/
env/
ENV/
env.bak/
venv.bak/
.Python
.venv/
studies/
# Local installations and builds
build/uv
build/uvx
cleanup_disk.sh
error_logs/
studies/
external/
local_src/
logs/
# Python cache
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
build/
develop-eggs/
dist/
downloads/

# Debug and temporary files
*_debug*.sh
*_fix*.sh
octave_*.sh
remote_*.sh
emergency_*.sh
test_final_*.sh
*_atlas_*.sh
explore_*.sh
*_compatibility_*.sh

# Log files
*.log
model_*.log
validate_*.log
run_*.log

# Temporary container configurations
container_*_atlas_*.json
container_*_debug*.json
container_*_fix*.json
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# Log files
*.log
run_bidspm.log
model_*.log

# Configuration files (keep examples but ignore actual configs)
config.json
container.json
# Keep example configs
!*_example.json
!example_*.json

# Jupyter Notebook
.ipynb_checkpoints

# pyenv
.python-version

# pipenv
Pipfile.lock

# poetry
poetry.lock

# celery beat schedule file
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# pytype static type analyzer
.pytype/

# Cython debug symbols
cython_debug/

# IDE
.vscode/
.idea/
*.swp
*.swo
*~

# OS generated files
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db

# Temporary files
*.tmp
*.temp
*.bak
*.backup
bidspm_runner.egg-info/

# Data directories (typically large, should be specified separately)
data/
rawdata/
derivatives/
scratch/
work/


# BIDS specific
.bidsignore

# Local installations (should not be uploaded to GitHub)
bidspm_local/
spm12_standalone/
octave_packages/
config/run_settings_e6e0e559afbd2916.json
debug_stats_141K599V_crom.m
bidspm_local_smooth_141T271A_crom.m