CytometryInR/PackageWalkthroughs.qmd at main · MZZS/CytometryInR · GitHub

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---
title: "Package Walkthroughs"
format: html
toc: TRUE
toc-location: right
sidebar: false
---

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# Background

The purpose of this page is to host the Vignette writing challenge entries. There are a substantial number of R packages on both Bioconductor and GitHub that we will not be able to get to during the course. My goal for the off-weeks is to have the class assist in navigating through the existing vignettes/articles for each package, and write up a basic .qmd file to help anyone trying to use these packages have a simpler learning curve in doing so than they would have otherwise.

# Bioconductor

## flowCore

## cytolib

## flowWorkspace

## ncdfFlow

## flowViz

## FlowSOM

## ggcyto

## openCyto

## quantiseqr

## flowStats

## CytoML

## CATALYST

## flowAI

## diffcyt

## flowDensity

## flowMeans

## PeacoQC

## flowFP

## flowClean

## flowPeaks

## COMPASS

## SamSPECTRAL

## flowVS

## cydar

## flowMerge

## flowTrans

## distinct

## flowCut

## flowMatch

## flowBeads

## flowTime

## sccomp

## flowCHIC

## flowSpecs

## DepecheR

## treekoR

## flowBin

## MetaCyto

## immunoClust

## scDataviz

## cytoMEM

## flowPloidy

## plotGrouper

## CytoDx

## Sconify

## flowPlots

## GateFinder

## flowGate

## flowGraph

## infinityFlow

## cyanoFilter

## optimalFlow

## CytoGLMM

## scifer

## cytoKernel

## CytoPipeline

## censcyt

## flowCyBar

## reconsi

## MACSQuantifyR

## CytoMDS

## CytoPipelineGUI

## MAPFX

## spillR

## tidyFlowCore

## CyTOFpower

## tidytof

## SuperCellCyto

# GitHub

## autospill

## autospectral

## flowMagic


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