BioPhi failed with TypeError: predict_scores() got an unexpected keyword argument 'model_version'

[chongDai]

I get this, Anybody can give me a hand?

---

Settings:

• Predicting using Sapiens model: lasted

• Numbering scheme: imgt

• CDR definition: imgt

• Ignoring mutations in CDR regions

• Humanizing using 1 iteration

2it [00:00, 12.96it/s]
Writing FASTA to file: humanized_test.fa
0%| | 0/2 [00:00<?, ?it/s]
Traceback (most recent call last):
File "/data/home/sczc830/.conda/envs/IgGM/lib/python3.10/site-packages/biophi/common/cli/main.py", line 11, in call
return self.main(*args, **kwargs)
File "/data/home/sczc830/.conda/envs/IgGM/lib/python3.10/site-packages/click/core.py", line 1383, in main
rv = self.invoke(ctx)
File "/data/home/sczc830/.conda/envs/IgGM/lib/python3.10/site-packages/click/core.py", line 1850, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/data/home/sczc830/.conda/envs/IgGM/lib/python3.10/site-packages/click/core.py", line 1246, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/data/home/sczc830/.conda/envs/IgGM/lib/python3.10/site-packages/click/core.py", line 814, in invoke
return callback(*args, **kwargs)
File "/data/home/sczc830/.conda/envs/IgGM/lib/python3.10/site-packages/biophi/humanization/cli/sapiens.py", line 105, in sapiens
return sapiens_fasta_only(
File "/data/home/sczc830/.conda/envs/IgGM/lib/python3.10/site-packages/biophi/humanization/cli/sapiens.py", line 202, in sapiens_fasta_only
humanization = humanize_chain(chain, params=humanization_params)
File "/data/home/sczc830/.conda/envs/IgGM/lib/python3.10/site-packages/biophi/humanization/methods/humanization.py", line 170, in humanize_chain
return sapiens_humanize_chain(parental_chain, params=params)
File "/data/home/sczc830/.conda/envs/IgGM/lib/python3.10/site-packages/biophi/humanization/methods/humanization.py", line 214, in sapiens_humanize_chain
pred = sapiens_predict_chain(humanized_chain, model_version=params.model_version)
File "/data/home/sczc830/.conda/envs/IgGM/lib/python3.10/site-packages/biophi/humanization/methods/humanization.py", line 250, in sapiens_predict_chain
return sapiens.predict_scores(
TypeError: predict_scores() got an unexpected keyword argument 'model_version'
────────────────────────────────────────────────────────────
BioPhi failed with TypeError: predict_scores() got an unexpected keyword argument 'model_version'

[tuln128]

@chongDai
The problem is caused by the difference between conda installed version and the github version of humanization.py. Replacing the former by the later one (https://github.com/Merck/BioPhi/blob/main/biophi/humanization/methods/humanization.py) will resolve the problem.
Best,