diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md new file mode 100644 index 00000000..455a8252 --- /dev/null +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -0,0 +1,10 @@ +**What problems does this PR solve?** +Provide a short description or reference to the relevant issue, explaining what problems this PR solves. + +**How has the changes been tested?** +In addition to automatic tests, has any manual testing been carried out? + +**Reasons for careful code review** +If any of the boxes below are checked, extra careful code review should be inititated. + + - [ ] This PR contains code that could remove data diff --git a/files/Dockerfile.snpseq-tester b/files/Dockerfile.snpseq-tester index ff3974a6..77463bcb 100644 --- a/files/Dockerfile.snpseq-tester +++ b/files/Dockerfile.snpseq-tester @@ -46,7 +46,7 @@ RUN touch /var/log/nginx/access.log RUN echo '*' > /etc/arteria/misc/summary.rsync RUN echo '*' > /etc/arteria/misc/hiseq.rsync RUN echo '*' > /etc/arteria/misc/olink_explore.rsync -RUN bash -c 'find /data/snpseq-tester/runfolders -maxdepth 2 -name "*SampleSheet.csv" |while read f; do n=$(echo $(basename $(dirname $f)) |rev |cut -f1 -d_ |rev); n=${n:1}; cp $f /mnt/samplesheet_processning/${n}_samplesheet.csv; done' +RUN bash -c 'find /data/snpseq-tester/runfolders -maxdepth 2 -name "*SampleSheet.csv" |while read f; do n=$(echo $(basename $(dirname $f)) |rev |cut -f1 -d_ |rev); n=${n:1}; cp $f /mnt/samplesheet_processning/bcl2fastq_${n}_samplesheet.csv; done' RUN bash -c 'find /data/snpseq-tester/runfolders -maxdepth 1 -type d -name "*A00001*" |while read d; do n=$(basename $d); touch /data/scratch/$n; touch /data/snpseq-tester/runfolders/${n}_archive; done' RUN cp /mnt/samplesheet_processning/*.csv /data/ RUN ln -s /usr/bin/echo /usr/local/bin/projman_filler