AlignAIR/CITATION.cff at main · MuteJester/AlignAIR · GitHub

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cff-version: 1.2.0
message: "If you use AlignAIR, please cite the following paper."
title: "AlignAIR: a neural aligner for immunoglobulin and T-cell-receptor repertoires"
type: software
version: "3.0.0"
date-released: 2026-07-18
authors:
  - family-names: Konstantinovsky
    given-names: Thomas
    email: thomaskon90@gmail.com
  - family-names: Peres
    given-names: Ayelet
  - family-names: Eisenberg
    given-names: Ran
  - family-names: Polak
    given-names: Pazit
  - family-names: Lindenbaum
    given-names: Ofir
  - family-names: Yaari
    given-names: Gur
license: GPL-3.0-or-later
repository-code: "https://github.com/MuteJester/AlignAIR"
url: "https://alignair.ai"
keywords:
  - AIRR
  - immunoglobulin
  - T-cell receptor
  - VDJ
  - sequence alignment
  - deep learning
preferred-citation:
  type: article
  title: "Enhancing sequence alignment of adaptive immune receptors through multi-task deep learning"
  authors:
    - family-names: Konstantinovsky
      given-names: Thomas
    - family-names: Peres
      given-names: Ayelet
    - family-names: Eisenberg
      given-names: Ran
    - family-names: Polak
      given-names: Pazit
    - family-names: Lindenbaum
      given-names: Ofir
    - family-names: Yaari
      given-names: Gur
  journal: "Nucleic Acids Research"
  year: 2025
  month: 7
  volume: 53
  issue: 13
  article-number: gkaf651
  doi: 10.1093/nar/gkaf651