From d393099a98ad781c7ff7723ed1db5fb9693b6eb3 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20David=20M=C3=BCller?= <57191390+t0mdavid-m@users.noreply.github.com> Date: Wed, 5 Nov 2025 10:16:50 +0100 Subject: [PATCH 1/3] dont ship problematic system dll --- .github/workflows/build-windows-executable-app.yaml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/build-windows-executable-app.yaml b/.github/workflows/build-windows-executable-app.yaml index 83d3f8b..6625f99 100644 --- a/.github/workflows/build-windows-executable-app.yaml +++ b/.github/workflows/build-windows-executable-app.yaml @@ -308,6 +308,7 @@ jobs: cp -r static streamlit_exe cp -r example-data streamlit_exe cp openms-bin/*.dll streamlit_exe + rm streamlit_exe/userenv.dll cp -r .streamlit streamlit_exe cp -r share streamlit_exe/share cp -r js-component streamlit_exe/js-component From 2f32065c2f6fd874b854a6e9ff8fd4201ca69c4f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tom=20David=20M=C3=BCller?= <57191390+t0mdavid-m@users.noreply.github.com> Date: Wed, 5 Nov 2025 13:39:41 +0100 Subject: [PATCH 2/3] downgrade pip --- Dockerfile | 1 + 1 file changed, 1 insertion(+) diff --git a/Dockerfile b/Dockerfile index 2605265..aa90e1c 100644 --- a/Dockerfile +++ b/Dockerfile @@ -79,6 +79,7 @@ SHELL ["/bin/bash", "--rcfile", "~/.bashrc"] SHELL ["mamba", "run", "-n", "streamlit-env", "/bin/bash", "-c"] # Install up-to-date cmake via mamba and packages for pyOpenMS build. +RUN mamba install 'pip<25' RUN mamba install cmake RUN pip install --upgrade pip && python -m pip install -U setuptools nose 'Cython<3.1' 'autowrap<0.23' pandas 'numpy==1.26.4' pytest From 1bad65b5ee2e51a521eba26a1274a16d8a366234 Mon Sep 17 00:00:00 2001 From: Tom David Mueller Date: Wed, 3 Dec 2025 11:33:41 +0100 Subject: [PATCH 3/3] Revert "downgrade pip" This reverts commit 2f32065c2f6fd874b854a6e9ff8fd4201ca69c4f. --- Dockerfile | 1 - 1 file changed, 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index aa90e1c..2605265 100644 --- a/Dockerfile +++ b/Dockerfile @@ -79,7 +79,6 @@ SHELL ["/bin/bash", "--rcfile", "~/.bashrc"] SHELL ["mamba", "run", "-n", "streamlit-env", "/bin/bash", "-c"] # Install up-to-date cmake via mamba and packages for pyOpenMS build. -RUN mamba install 'pip<25' RUN mamba install cmake RUN pip install --upgrade pip && python -m pip install -U setuptools nose 'Cython<3.1' 'autowrap<0.23' pandas 'numpy==1.26.4' pytest