Replace missing opentps.core.examples imports with local helper modules (#6)

Copilot · Eliot-P · web-flow · commit 048b6991bfb7 · 2026-02-03T12:02:06.000+01:00
* Initial plan

* Add helper modules syntheticData.py and showStuff.py and update imports

---------

Co-authored-by: copilot-swe-agent[bot] &lt;198982749+Copilot@users.noreply.github.com&gt;
Co-authored-by: Eliot-P &lt;54665331+Eliot-P@users.noreply.github.com&gt;
diff --git a/examples/Segmentation/run_Segmentation.py b/examples/Segmentation/run_Segmentation.py
@@ -31,7 +31,9 @@
 from opentps.core.data.images import CTImage
 from opentps.core.processing.segmentation.segmentation3D import applyThreshold
 from opentps.core.processing.segmentation.segmentationCT import SegmentationCT
-from opentps.core.examples.syntheticData import *
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from syntheticData import *
 
 logger = logging.getLogger(__name__)
 
diff --git a/examples/dynamicData/exampleInterFractionChanges.py b/examples/dynamicData/exampleInterFractionChanges.py
@@ -46,7 +46,9 @@
 from opentps.core.processing.deformableDataAugmentationToolBox.modelManipFunctions import *
 from opentps.core.processing.imageProcessing.imageTransform3D import rotateData, translateData, applyTransform3D
 from opentps.core.processing.imageProcessing.resampler3D import resampleImage3DOnImage3D
-from opentps.core.examples.syntheticData import createSynthetic4DCT
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from syntheticData import createSynthetic4DCT
 
 logger = logging.getLogger(__name__)
 
diff --git a/examples/dynamicData/run_exampleApplyBaselineShiftToModel.py b/examples/dynamicData/run_exampleApplyBaselineShiftToModel.py
@@ -34,7 +34,9 @@
 from opentps.core.processing.imageProcessing.syntheticDeformation import applyBaselineShift
 from opentps.core.data.dynamicData._dynamic3DModel import Dynamic3DModel
 from opentps.core.data.dynamicData._dynamic3DSequence import Dynamic3DSequence
-from opentps.core.examples.syntheticData import *
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from syntheticData import *
 
 logger = logging.getLogger(__name__)
 
diff --git a/examples/dynamicData/run_exampleDeformableBreathigDataAugmentation.py b/examples/dynamicData/run_exampleDeformableBreathigDataAugmentation.py
@@ -39,7 +39,9 @@
 from opentps.core.processing.deformableDataAugmentationToolBox.generateDynamicSequencesFromModel import generateDynSeqFromBreathingSignalsAndModel
 from opentps.core.processing.imageProcessing.imageTransform3D import getVoxelIndexFromPosition
 from opentps.core.processing.imageProcessing.resampler3D import resample
-from opentps.core.examples.syntheticData import*
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from syntheticData import*
 
 logger = logging.getLogger(__name__)
 
diff --git a/examples/dynamicData/run_exampleDeformationFromWeightMaps.py b/examples/dynamicData/run_exampleDeformationFromWeightMaps.py
@@ -31,7 +31,9 @@
 
 from opentps.core.processing.imageProcessing import resampler3D
 from opentps.core.data.dynamicData._dynamic3DModel import Dynamic3DModel
-from opentps.core.examples.syntheticData import createSynthetic4DCT
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from syntheticData import createSynthetic4DCT
 from opentps.core.processing.deformableDataAugmentationToolBox.weightMaps import generateDeformationFromTrackers, generateDeformationFromTrackersAndWeightMaps
 
 logger = logging.getLogger(__name__)
diff --git a/examples/dynamicData/run_exampleMidP.py b/examples/dynamicData/run_exampleMidP.py
@@ -33,7 +33,9 @@
 from opentps.core.data.dynamicData._dynamic3DModel import Dynamic3DModel
 from opentps.core.data.dynamicData._dynamic3DSequence import Dynamic3DSequence
 from opentps.core.data.images import CTImage
-from opentps.core.examples.syntheticData import *
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from syntheticData import *
 
 logger = logging.getLogger(__name__)
 #%%
diff --git a/examples/imageProcessing/cupyVSsitkTransforms.py b/examples/imageProcessing/cupyVSsitkTransforms.py
@@ -33,8 +33,10 @@
 from opentps.core.data.images import VectorField3D
 from opentps.core.data.dynamicData._dynamic3DModel import Dynamic3DModel
 from opentps.core.data._transform3D import Transform3D
-from opentps.core.examples.showStuff import showModelWithAnimatedFields
-from opentps.core.examples.syntheticData import *
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from showStuff import showModelWithAnimatedFields
+from syntheticData import *
 from opentps.core.processing.imageProcessing.resampler3D import resampleImage3DOnImage3D
 from opentps.core.processing.imageProcessing.imageTransform3D import rotateData, translateData
 from opentps.core.processing.imageProcessing.resampler3D import resample
diff --git a/examples/imageProcessing/exampleTransform3DCupy.py b/examples/imageProcessing/exampleTransform3DCupy.py
@@ -33,8 +33,10 @@
 from opentps.core.data.images import VectorField3D
 from opentps.core.data.dynamicData._dynamic3DModel import Dynamic3DModel
 from opentps.core.data._transform3D import Transform3D
-from opentps.core.examples.showStuff import showModelWithAnimatedFields
-from opentps.core.examples.syntheticData import *
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from showStuff import showModelWithAnimatedFields
+from syntheticData import *
 from opentps.core.processing.imageProcessing.resampler3D import resampleImage3DOnImage3D
 from opentps.core.processing.imageProcessing.imageTransform3D import rotateData, translateData
 from opentps.core.processing.imageProcessing.resampler3D import resample
diff --git a/examples/imageProcessing/run_exampleApplyBaselineShift.py b/examples/imageProcessing/run_exampleApplyBaselineShift.py
@@ -32,7 +32,9 @@
 from opentps.core.data.images import CTImage
 from opentps.core.data.images import ROIMask
 from opentps.core.processing.imageProcessing.syntheticDeformation import applyBaselineShift
-from opentps.core.examples.syntheticData import *
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from syntheticData import *
 
 logger = logging.getLogger(__name__)
 
diff --git a/examples/imageProcessing/run_exampleTransform3D.py b/examples/imageProcessing/run_exampleTransform3D.py
@@ -31,8 +31,10 @@
 from opentps.core.data.images import VectorField3D
 from opentps.core.data.dynamicData._dynamic3DModel import Dynamic3DModel
 from opentps.core.data._transform3D import Transform3D
-from opentps.core.examples.showStuff import showModelWithAnimatedFields
-from opentps.core.examples.syntheticData import *
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from showStuff import showModelWithAnimatedFields
+from syntheticData import *
 from opentps.core.processing.imageProcessing.resampler3D import resampleImage3DOnImage3D
 from opentps.core.processing.imageProcessing.imageTransform3D import rotateData, translateData
 from opentps.core.processing.imageProcessing.resampler3D import resample
diff --git a/examples/multiplePythonEnv/run_backAndForthParent.py b/examples/multiplePythonEnv/run_backAndForthParent.py
@@ -41,8 +41,9 @@
 from subprocess import Popen, PIPE
 from pathlib import Path
 import subprocess
-
-from opentps.core.examples.syntheticData import createSynthetic3DCT
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from syntheticData import createSynthetic3DCT
 
 #%%
 # Set the child script environnement path and child scrip file path
diff --git a/examples/multiplePythonEnv/run_sharedMemoryParent.py b/examples/multiplePythonEnv/run_sharedMemoryParent.py
@@ -32,8 +32,9 @@
 import subprocess
 from multiprocessing import shared_memory
 from pathlib import Path
-
-from opentps.core.examples.syntheticData import createSynthetic3DCT
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from syntheticData import createSynthetic3DCT
 
 #%%
 # set the child script environnement path and child scrip file path
diff --git a/examples/registration/run_exampleMorphons.py b/examples/registration/run_exampleMorphons.py
@@ -31,7 +31,9 @@
 
 from opentps.core.data.images import CTImage
 from opentps.core.processing.registration.registrationMorphons import RegistrationMorphons
-from opentps.core.examples.syntheticData import *
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from syntheticData import *
 
 logger = logging.getLogger(__name__)
 
diff --git a/examples/registration/run_exampleRigid.py b/examples/registration/run_exampleRigid.py
@@ -31,7 +31,9 @@
 #import the needed opentps.core packages
 
 from opentps.core.processing.registration.registrationRigid import RegistrationRigid
-from opentps.core.examples.syntheticData import *
+import sys, os
+sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))
+from syntheticData import *
 from opentps.core.processing.imageProcessing.resampler3D import resampleImage3DOnImage3D
 from opentps.core.processing.imageProcessing.imageTransform3D import rotateData, translateData
 
diff --git a/examples/showStuff.py b/examples/showStuff.py
diff --git a/examples/syntheticData.py b/examples/syntheticData.py
