supergraph/make-conda-environment.sh at master · Orieus/supergraph · GitHub

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#!/bin/bash

MANAGER="mamba"

NAME="supergraph"

LIBRARIES=(
    python
    matplotlib
    python-igraph
    mysqlclient
    pyyaml pandas scipy tqdm colorama neo4j-python-driver networkx seaborn scikit-learn numba python-louvain
    leidenalg
    dask
    fa2
)

CHANNELS=(
    defaults
)

# ---

COLOR="\033[40m\033[32m"
UNCOLOR="\033[0m"


# ------------ setup

# only required if "anaconda" is not in the path
source $HOME/$MY_CONDA_INSTALLATION/etc/profile.d/conda.sh

# from https://stackoverflow.com/a/9429887/3967334
LIBRARIES_CONCATENATED=$(IFS=" " ; echo "${LIBRARIES[*]}")

# from https://stackoverflow.com/a/17841619/3967334
function join_by { local d=${1-} f=${2-}; if shift 2; then printf %s "$f" "${@/#/$d}"; fi; }

CHANNELS_CONCATENATED=$(join_by ' -c ' "${CHANNELS[@]}")

# ------------ installation

$MANAGER create --yes -n $NAME $LIBRARIES_CONCATENATED -c $CHANNELS_CONCATENATED

# ------------ pip
conda activate $NAME

# pip stuff here....

# ------------

echo -e new environment is \"$COLOR$NAME$UNCOLOR\"