convert multiple-sequence-alignments to character-state intersection graphs
This code converts a multiple alignments, given in fasta format (one line per species) to the corresponding character-state intersection graph.
build requirements:
- cmake
- boost
- gcc
runtime requirements:
- boost
compile:
cmake .
(optionally, compile with debug support:cmake -DDEBUG=xwhere x is the debug level (0 ... 5, where 0 means no debugging output))make
install:
make install
usage:
ma_to_cc <input-file> [output-file]
see also
ma_to_cc --help