GQP/train.py at main · PEESEgroup/GQP · GitHub

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# -*- coding: utf-8 -*-
"""
Entry script for the Gated Query Pooling (GQP) peptide predictor.
The implementation is split across the gqp package for readability.
"""

from gqp import (
    TrainConfig,
    set_seed,
    resolve_device,
    decode_input_ids,
    prepare_from_npz,
    load_jsonl_sequences,
    load_jsonl_multitask,
    End2EndClassifier,
    train_gqp,
    evaluate_gqp,
    load_checkpoint,
    save_checkpoint,
    fit_temperature_and_threshold,
)
from gqp.cli import build_argparser, main

__all__ = [
    "TrainConfig",
    "set_seed",
    "resolve_device",
    "decode_input_ids",
    "prepare_from_npz",
    "load_jsonl_sequences",
    "load_jsonl_multitask",
    "End2EndClassifier",
    "train_gqp",
    "evaluate_gqp",
    "load_checkpoint",
    "save_checkpoint",
    "fit_temperature_and_threshold",
    "build_argparser",
    "main",
]


if __name__ == "__main__":
    main()