From 30dcbd27dfc30203d748dde2f392192a8d5cd5d4 Mon Sep 17 00:00:00 2001 From: Sergey Koldyba Date: Thu, 24 Jul 2025 21:59:41 +0200 Subject: [PATCH 01/12] adding mypy for static typing --- .github/workflows/type-check.yml | 42 ++++ .pre-commit-config.yaml | 10 +- .vscode/extensions.json | 1 + .vscode/settings.json | 22 ++- README.md | 6 +- pyproject.toml | 21 ++ src/hello.py | 4 +- uv.lock | 322 +++++++++++++++++++------------ 8 files changed, 294 insertions(+), 134 deletions(-) create mode 100644 .github/workflows/type-check.yml diff --git a/.github/workflows/type-check.yml b/.github/workflows/type-check.yml new file mode 100644 index 0000000..607794f --- /dev/null +++ b/.github/workflows/type-check.yml @@ -0,0 +1,42 @@ +on: + workflow_dispatch: {} + pull_request: {} + push: + branches: + - main + - master + paths: + - .github/workflows/type-check.yml + - "**.py" + - "**.pyi" + - pyproject.toml + - uv.lock + schedule: + # random HH:MM to avoid a load spike on GitHub Actions at 00:00 + - cron: 42 8 * * * + +name: Type Check + +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + +jobs: + type-check: + name: mypy + runs-on: ubuntu-latest + permissions: + contents: read + + steps: + - uses: actions/checkout@v4 + + - uses: PalisadeResearch/ci-action@master + with: + github_access_token: ${{ github.token }} + + - name: Install dev dependencies + run: uv sync --extra dev + + - name: Run mypy + run: uv run mypy . \ No newline at end of file diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index c270826..6dc5a76 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -27,7 +27,15 @@ repos: language: system types_or: [python, pyi, jupyter] require_serial: true + - id: mypy + name: mypy + description: "Run 'mypy' for Python type checking" + entry: bash -c 'uv sync --extra dev --quiet && uv run mypy .' + language: system + types: [python] + require_serial: true + pass_filenames: false # pre-commit.ci SaaS does not have our Nix environment so we skip Nix-packaged hooks ci: - skip: [nixfmt, uv-lock, ruff, ruff-format] + skip: [nixfmt, uv-lock, ruff, ruff-format, mypy] diff --git a/.vscode/extensions.json b/.vscode/extensions.json index 376e221..0cb055e 100644 --- a/.vscode/extensions.json +++ b/.vscode/extensions.json @@ -3,6 +3,7 @@ "myriad-dreamin.tinymist", "ms-python.black-formatter", "charliermarsh.ruff", + "ms-python.mypy-type-checker", "mkhl.direnv", "editorconfig.editorconfig", "timonwong.shellcheck", diff --git a/.vscode/settings.json b/.vscode/settings.json index 31967ed..8837129 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -15,5 +15,23 @@ "notebook.source.organizeImports": "explicit" }, "tinymist.formatterMode": "typstyle", - "tinymist.systemFonts": false -} + "tinymist.systemFonts": false, + "cursorpyright.analysis.autoImportCompletions": true, + "cursorpyright.analysis.typeCheckingMode": "basic", + // MyPy integration + "mypy-type-checker.args": [ + "--config-file=pyproject.toml" + ], + "mypy-type-checker.interpreter": [ + "uv", + "run", + "python" + ], + "mypy-type-checker.importStrategy": "useBundled", + "mypy-type-checker.showNotifications": "onError", + // Enhanced type checking experience + "python.analysis.completeFunctionParens": true, + "python.analysis.inlayHints.functionReturnTypes": true, + "python.analysis.inlayHints.variableTypes": true, + "python.analysis.inlayHints.pytestParameters": true +} \ No newline at end of file diff --git a/README.md b/README.md index f2229ab..82a896b 100644 --- a/README.md +++ b/README.md @@ -5,6 +5,7 @@ A template repository implementing Palisade's coding guide. Features: - Nix + uv + direnv environment for development and CI - Figures and the paper build in CI - Lint and format pre-commit hooks +- Python type checking with mypy - VSCode settings and extensions ## Development @@ -76,9 +77,12 @@ Use Cursor to edit code. It will suggest extensions to install when you open the ```bash cd template # automatically loads environment ninja # builds figures and the paper -git commit # checks format and lints +uv run mypy . # run type checking locally +git commit # checks format, lints, and type checks ``` +Type checking runs automatically in CI on pull requests and pushes to main, as well as in pre-commit hooks. + ### Files to know - `flake.nix` defines system dependencies like `texlive` diff --git a/pyproject.toml b/pyproject.toml index ceb492d..809e1ee 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9,11 +9,32 @@ dependencies = [ "numpy>=2.2.2", ] +[project.optional-dependencies] +dev = [ + "mypy>=1.8.0", + "types-setuptools", # Common type stubs +] + [tool.pyright] # disable pyright in favor of ruff typeCheckingMode = "off" ignore = ["*"] +[tool.mypy] +python_version = "3.13" +check_untyped_defs = true +disallow_incomplete_defs = true +disallow_untyped_decorators = true +disallow_untyped_defs = true +no_implicit_optional = true +strict_equality = true +warn_no_return = true +warn_redundant_casts = true +warn_return_any = true +warn_unreachable = true +warn_unused_configs = true +warn_unused_ignores = true + [tool.ruff.lint] select = [ "E", # pycodestyle - Style guide enforcement diff --git a/src/hello.py b/src/hello.py index dca9fd9..592e286 100644 --- a/src/hello.py +++ b/src/hello.py @@ -4,7 +4,7 @@ import numpy as np -def create_figure(path: str): +def create_figure(path: str) -> None: # Create sample data x = np.linspace(0, 10, 100) y = np.sin(x) @@ -22,7 +22,7 @@ def create_figure(path: str): plt.savefig(path) -def main(): +def main() -> None: if len(sys.argv) != 2: print("Usage: python3 hello.py ") sys.exit(1) diff --git a/uv.lock b/uv.lock index 2c36a21..66572c8 100644 --- a/uv.lock +++ b/uv.lock @@ -1,4 +1,5 @@ version = 1 +revision = 2 requires-python = ">=3.13" [[package]] @@ -8,90 +9,90 @@ source = { registry = "https://pypi.org/simple" } dependencies = [ { name = 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a/.github/workflows/type-check.yml b/.github/workflows/type-check.yml deleted file mode 100644 index 607794f..0000000 --- a/.github/workflows/type-check.yml +++ /dev/null @@ -1,42 +0,0 @@ -on: - workflow_dispatch: {} - pull_request: {} - push: - branches: - - main - - master - paths: - - .github/workflows/type-check.yml - - "**.py" - - "**.pyi" - - pyproject.toml - - uv.lock - schedule: - # random HH:MM to avoid a load spike on GitHub Actions at 00:00 - - cron: 42 8 * * * - -name: Type Check - -concurrency: - group: ${{ github.workflow }}-${{ github.ref }} - cancel-in-progress: true - -jobs: - type-check: - name: mypy - runs-on: ubuntu-latest - permissions: - contents: read - - steps: - - uses: actions/checkout@v4 - - - uses: PalisadeResearch/ci-action@master - with: - github_access_token: ${{ github.token }} - - - name: Install dev dependencies - run: uv sync --extra dev - - - name: Run mypy - run: uv run mypy . \ No newline at end of file From fe73acd647ea28e5cb98e553fdfd7fb0426c1d59 Mon Sep 17 00:00:00 2001 From: Sergey Koldyba Date: Fri, 25 Jul 2025 11:14:50 +0200 Subject: [PATCH 04/12] move uv to nix, update readme --- .pre-commit-config.yaml | 2 +- README.md | 3 -- flake.nix | 1 + pyproject.toml | 6 ---- uv.lock | 65 ----------------------------------------- 5 files changed, 2 insertions(+), 75 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 6dc5a76..3f35d05 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -30,7 +30,7 @@ repos: - id: mypy name: mypy description: "Run 'mypy' for Python type checking" - entry: bash -c 'uv sync --extra dev --quiet && uv run mypy .' + entry: mypy . language: system types: [python] require_serial: true diff --git a/README.md b/README.md index 82a896b..e4a7aa0 100644 --- a/README.md +++ b/README.md @@ -77,12 +77,9 @@ Use Cursor to edit code. It will suggest extensions to install when you open the ```bash cd template # automatically loads environment ninja # builds figures and the paper -uv run mypy . # run type checking locally git commit # checks format, lints, and type checks ``` -Type checking runs automatically in CI on pull requests and pushes to main, as well as in pre-commit hooks. - ### Files to know - `flake.nix` defines system dependencies like `texlive` diff --git a/flake.nix b/flake.nix index e15dc70..a963900 100644 --- a/flake.nix +++ b/flake.nix @@ -24,6 +24,7 @@ # Python uv ruff + mypy # Typesetting typst texlive.combined.scheme-medium diff --git a/pyproject.toml b/pyproject.toml index 2214cd1..6473c42 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9,12 +9,6 @@ dependencies = [ "numpy>=2.2.2", ] -[project.optional-dependencies] -dev = [ - "mypy>=1.8.0", - "types-setuptools", # Common type stubs -] - [tool.pyright] # disable pyright in favor of ruff typeCheckingMode = "off" diff --git a/uv.lock 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changed, 2 insertions(+), 2 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 3f35d05..f64ff4e 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -30,7 +30,7 @@ repos: - id: mypy name: mypy description: "Run 'mypy' for Python type checking" - entry: mypy . + entry: mypy . --python-executable ./.venv/bin/python language: system types: [python] require_serial: true diff --git a/flake.nix b/flake.nix index 6c0e0e0..a963900 100644 --- a/flake.nix +++ b/flake.nix @@ -24,7 +24,7 @@ # Python uv ruff - python313Packages.mypy + mypy # Typesetting typst texlive.combined.scheme-medium From edcc54f28b574e56da4e41704709694c23135e9d Mon Sep 17 00:00:00 2001 From: Sergey Koldyba Date: Fri, 25 Jul 2025 12:50:40 +0200 Subject: [PATCH 07/12] remove python version pinning for mypy config --- pyproject.toml | 1 - 1 file changed, 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 6473c42..467fb70 100644 --- a/pyproject.toml +++ 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checking" + entry: ty check language: system types: [python] require_serial: true @@ -38,4 +38,4 @@ repos: # pre-commit.ci SaaS does not have our Nix environment so we skip Nix-packaged hooks ci: - skip: [nixfmt, uv-lock, ruff, ruff-format, mypy] + skip: [nixfmt, uv-lock, ruff, ruff-format, ty] diff --git a/.vscode/extensions.json b/.vscode/extensions.json index 0cb055e..86b202c 100644 --- a/.vscode/extensions.json +++ b/.vscode/extensions.json @@ -1,13 +1,12 @@ { "recommendations": [ "myriad-dreamin.tinymist", - "ms-python.black-formatter", "charliermarsh.ruff", - "ms-python.mypy-type-checker", "mkhl.direnv", "editorconfig.editorconfig", "timonwong.shellcheck", "melak47.ninja-syntax", - "semgrep.semgrep" + "semgrep.semgrep", + "astral-sh.ty" ] } \ No newline at end of file diff --git a/.vscode/settings.json b/.vscode/settings.json index 99a1bc2..29f5825 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -1,14 +1,6 @@ { - "python.analysis.typeCheckingMode": "basic", - 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+5,7 @@ A template repository implementing Palisade's coding guide. Features: - Nix + uv + direnv environment for development and CI - Figures and the paper build in CI - Lint and format pre-commit hooks -- Python type checking with mypy +- Python type checking with ty - VSCode settings and extensions ## Development From 6ad0999337dbdb687d7048e60f7a7d7ea3c1211c Mon Sep 17 00:00:00 2001 From: dmitrii-palisaderesearch <157104686+dmitrii-palisaderesearch@users.noreply.github.com> Date: Mon, 18 Aug 2025 11:54:36 +0100 Subject: [PATCH 12/12] settings.json: Drop pyright settings since we disable the language server --- .vscode/settings.json | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/.vscode/settings.json b/.vscode/settings.json index 29f5825..6224ad2 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -1,5 +1,5 @@ { - // disable python language server + // disable python language server since we're using astral-sh.ty "python.languageServer": "None", "notebook.formatOnSave.enabled": true, "notebook.codeActionsOnSave": { @@ -8,11 +8,9 @@ }, "tinymist.formatterMode": "typstyle", "tinymist.systemFonts": false, - "cursorpyright.analysis.autoImportCompletions": true, - "cursorpyright.analysis.typeCheckingMode": "basic", // Format Python files on save using ruff "[python]": { "editor.formatOnSave": true, "editor.defaultFormatter": "charliermarsh.ruff" } -} \ No newline at end of file +}