From 2b5e4b84d2a9ba12a01433d8dee1eb3220f80e81 Mon Sep 17 00:00:00 2001 From: alexb <189858354+alexb-palisaderesearch@users.noreply.github.com> Date: Wed, 10 Sep 2025 18:47:11 +0300 Subject: [PATCH 01/14] agent: Add graph agent stub --- .env.example | 14 + pyproject.toml | 5 + src/template/agent/README.md | 1 + src/template/agent/__init__.py | 0 src/template/agent/env.py | 16 + src/template/agent/main.py | 141 +++ src/template/agent/nodes.py | 34 + src/template/agent/state.py | 14 + uv.lock | 2087 ++++++++++++++++++++++++++++++-- 9 files changed, 2198 insertions(+), 114 deletions(-) create mode 100644 .env.example create mode 100644 src/template/agent/README.md create mode 100644 src/template/agent/__init__.py create mode 100644 src/template/agent/env.py create mode 100644 src/template/agent/main.py create mode 100644 src/template/agent/nodes.py create mode 100644 src/template/agent/state.py diff --git a/.env.example b/.env.example new file mode 100644 index 0000000..bdba180 --- /dev/null +++ b/.env.example @@ -0,0 +1,14 @@ +# LOGFIRE_ENVIRONMENT=hostname-username + +LOGFIRE_READ_TOKEN= +LOGFIRE_WRITE_TOKEN= +# LOGFIRE_CONSOLE_VERBOSE=True +# LOGFIRE_CONSOLE_MIN_LOG_LEVEL=debug + +LANGFUSE_SKIP=1 +# LANGFUSE_SECRET_KEY= +# LANGFUSE_PUBLIC_KEY= +LANGFUSE_HOST=https://us.cloud.langfuse.com + +# GOOGLE_API_KEY= +# OPENAI_API_KEY= diff --git a/pyproject.toml b/pyproject.toml index 2a7250e..8340df8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -5,8 +5,12 @@ description = "Add your description here" readme = "README.md" requires-python = ">=3.13" dependencies = [ + "ipdb>=0.13.13", + "langfuse>=3.3.4", "matplotlib>=3.10.0", "numpy>=2.2.2", + "pydantic-ai>=1.0.2", + "python-ulid[pydantic,pydatnic]>=3.1.0", ] [dependency-groups] dev = [ @@ -23,6 +27,7 @@ sources = ["src"] [project.scripts] hello = "template.hello:main" +agent = "template.agent.main:main" [tool.pyright] # disable pyright in favor of ruff diff --git a/src/template/agent/README.md b/src/template/agent/README.md new file mode 100644 index 0000000..7064491 --- /dev/null +++ b/src/template/agent/README.md @@ -0,0 +1 @@ +# TBD diff --git a/src/template/agent/__init__.py b/src/template/agent/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/src/template/agent/env.py b/src/template/agent/env.py new file mode 100644 index 0000000..5dd689b --- /dev/null +++ b/src/template/agent/env.py @@ -0,0 +1,16 @@ +from __future__ import annotations + +from dataclasses import dataclass +from pathlib import Path + + +@dataclass +class Env: + """ + Data here will *not* be a part of a run history. + """ + + run_path: Path + readme: str + + # TODO: add handles and capabilities here diff --git a/src/template/agent/main.py b/src/template/agent/main.py new file mode 100644 index 0000000..2224427 --- /dev/null +++ b/src/template/agent/main.py @@ -0,0 +1,141 @@ +from __future__ import annotations + +import argparse +import asyncio +from contextlib import nullcontext +from pathlib import Path +from shutil import copytree + +import logfire +from ipdb import launch_ipdb_on_exception +from pydantic_graph import End, Graph +from pydantic_graph.persistence.file import FileStatePersistence + +from .env import Env +from .state import State +from . import nodes + + +def main(): + """ + Squeeze the external world and distill into the Env fields. + """ + parser = argparse.ArgumentParser(description="Run me") + parser.add_argument("--no-logfire", action="store_true") + parser.add_argument("--debug", action="store_true") + parser.add_argument("--restore", metavar="DIR", help="Run path to resume/fork.") + parser.add_argument("readme") + + # TODO: add more fancy args + args = parser.parse_args() + + logfire.configure( + send_to_logfire=not args.no_logfire, + scrubbing=False, + ) + logfire.instrument_openai() + # TODO: instrument other stuff like model providers + + root_attrs = { + "author": "me", + # TODO: add run metadata here + } + # This sets a "resource scope" for the run + # Things created here would be closed/finalized/cleaned on exit. + # For example you can't add log entries to that span after leaving this block. + # But a context manager can be asked to restore the environment to match what the agent previously had. + with ( + logfire.span("example_hello-world", _span_name="main", **root_attrs) as root, + (launch_ipdb_on_exception if args.debug else nullcontext)(), + # TODO: add more resource-managing contexts here + ): + # Your unique identifier for this run (make a fresh one for forks) + run_id = f"{root.context.trace_id:032x}" + + # New runs appear on the bottom, automatically "sorted" by timestamp + run_path = Path("runs") / Path(run_id) + run_path.mkdir(exist_ok=True, parents=True) + logfire.notice(f"Run path: {run_path}") + + if args.restore: + with logfire.span(f"Restoring from {args.restore}"): + old_path = Path(args.restore) + if not old_path.exists: + raise Exception(f"Restore path does not exist: {args.restore}") + if not old_path.is_dir(): + raise Exception(f"Restore path is not a directory: {args.restore}") + # XXX: blindly copying the old run path (containing the history file) + # While this is enough to recover graph state, you may have to write some metadata file + # to record external resources used like docker image IDs, IPs + copytree(src=old_path, dst=run_path, dirs_exist_ok=True) + + # TODO: Start the requested services and put their handles here + deps = Env( + run_path=run_path, + readme=args.readme, + ) + asyncio.run(agent(deps)) + + +async def agent(deps: Env): + """ + Prepare and drive the agent loop inside the provided environment. + """ + # Instantiate the graph + graph = Graph[State, Env](nodes=nodes.all_nodes) + start = nodes.Step + + # TODO: You can put more graph-related setup here + with open(deps.run_path / Path("schema.mmd"), "w") as f: + f.write(graph.mermaid_code(start_node=start)) + + # Initialize the instance + history_path = deps.run_path / Path("history.json") + persistence = FileStatePersistence(history_path) + persistence.set_graph_types(graph) + if snapshots := await persistence.load_all(): + # TODO: add snapshot filtering like "drop N last steps" + node, state = None, None + logfire.debug(f"Loaded {len(snapshots)} snapshots from {history_path}") + for snapshot in reversed(snapshots): + if snapshot.kind == "end": + logfire.debug("Resuming an ended run") + continue + if snapshot.kind == "node": + node = snapshot.node + if isinstance(node, End): + logfire.debug(f"Skipping End node {snapshot.id}") + continue + logfire.debug(f"Restoring from snapshot {snapshot.id}") + state = snapshot.state + break + if node is None or state is None: + raise RuntimeError( + f"No viable snapshots in the persistence file {history_path}" + ) + else: + node = start() + state = State() + + await graph.initialize( + node=node, + state=state, + persistence=persistence, + ) + + # Run the graph to completion + while True: + async with graph.iter_from_persistence(persistence, deps=deps) as running: + next = await running.next() + # TODO: add top-level processing related to the running instance + logfire.debug(f"Running state: {running.state}") + + # TODO: check the extra termination conditions + if isinstance(next, End): + break + + pass # State snapshot is taken here and recorded in the file + + +if __name__ == "__main__": + main() diff --git a/src/template/agent/nodes.py b/src/template/agent/nodes.py new file mode 100644 index 0000000..1052993 --- /dev/null +++ b/src/template/agent/nodes.py @@ -0,0 +1,34 @@ +from __future__ import annotations + +from dataclasses import dataclass + +import logfire +from pydantic_graph import BaseNode, End + +from .env import Env +from .state import State + +## Agent's FSM nodes + + +@dataclass +class Step(BaseNode[State, Env, None]): # Using State and Env... + async def run( + self, ctx + ) -> Step | End: # ... do stuff and switch to either Step or End. + # Mutate the state (persisted in the history file) + 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--- a/src/template/agent/main.py +++ b/src/template/agent/main.py @@ -3,17 +3,19 @@ import argparse import asyncio from contextlib import nullcontext +import os from pathlib import Path from shutil import copytree -import logfire from ipdb import launch_ipdb_on_exception +import logfire from pydantic_graph import End, Graph from pydantic_graph.persistence.file import FileStatePersistence +from . import nodes +from ..utils import git from .env import Env from .state import State -from . import nodes def main(): @@ -36,16 +38,21 @@ def main(): logfire.instrument_openai() # TODO: instrument other stuff like model providers - root_attrs = { - "author": "me", + branch_name = git.current_branch() or "unknown" + commit_hash = git.current_commit() or "unknown" + run_name = f"run-{branch_name}-{commit_hash}" + run_attrs = { # TODO: add run metadata here } + if url := git.github_commit_link(commit_hash): + run_attrs["github_commit_link"] = url + # This sets a "resource scope" for the run # Things created here would be closed/finalized/cleaned on exit. # For example you can't add log entries to that span after leaving this block. # But a context manager can be asked to restore the environment to match what the agent previously had. with ( - logfire.span("example_hello-world", _span_name="main", **root_attrs) as root, + logfire.span(run_name, _span_name="main", **run_attrs) as root, (launch_ipdb_on_exception if args.debug else nullcontext)(), # TODO: add more resource-managing contexts here ): diff --git a/src/template/utils/__init__.py b/src/template/utils/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/src/template/utils/git.py b/src/template/utils/git.py new file mode 100644 index 0000000..3c37b0c --- /dev/null +++ b/src/template/utils/git.py @@ -0,0 +1,148 @@ +from __future__ import annotations + +import subprocess +import sys + + +def current_branch() -> str: + """Return the name of the current git branch. + + Falls back to an empty string if git command fails (e.g., outside a git repo). + """ + + try: + result = subprocess.check_output( + ["git", "rev-parse", "--abbrev-ref", "HEAD"], + text=True, + stderr=subprocess.DEVNULL, + ) + return result.strip() + except Exception: + # Not a git repository or git not installed + return "" + + +def ensure_experiment_branch() -> str: + """Abort execution if current branch does not start with ``experiment``. + + Returns the branch name when the pre‑condition passes. Otherwise, prints an + instructional message and terminates the script with exit code ``1``. + """ + + branch = current_branch() + if not branch or not branch.startswith("experiment"): + msg = ( + f"[ABORT] Current branch is '{branch or 'unknown'}'. " + "Switch to an *experiment* branch first (hint: use the `fork-worktree` script)." + ) + print(msg, file=sys.stderr) + sys.exit(1) + + return branch + + +def commit_and_push(commit_message: str) -> None: + """Stage all changes, commit, and push **HEAD** to origin. + + * Adds all modifications (``git add -A``) + * Creates a commit with the supplied message (tolerates *nothing to commit*) + * Pushes the current ``HEAD`` to ``origin`` and sets upstream (``-u``) + – this will create the remote branch if it doesn't exist yet. + """ + + try: + # Stage everything + subprocess.run(["git", "add", "-A"], check=True) + + # Create commit (ignore "nothing to commit" situations) + commit_proc = subprocess.run( + ["git", "commit", "-m", commit_message], + capture_output=True, + text=True, + ) + + if commit_proc.returncode not in (0, 1): + # 1 is "nothing to commit" – treat as success + print(commit_proc.stdout + commit_proc.stderr, file=sys.stderr) + sys.exit(commit_proc.returncode) + + # Push HEAD; -u sets upstream if needed + subprocess.run(["git", "push", "-u", "origin", "HEAD"], check=True) + except subprocess.CalledProcessError as exc: + print(f"[ERROR] Git operation failed: {exc}", file=sys.stderr) + sys.exit(exc.returncode) + + +def current_commit() -> str: + """Return the short hash of the current git HEAD commit.""" + try: + result = subprocess.check_output( + ["git", "rev-parse", "--short", "HEAD"], + text=True, + stderr=subprocess.DEVNULL, + ) + return result.strip() + except Exception: + return "unknown" + + +def github_repo_url() -> str: + """Return the GitHub repository URL from git remote origin. + + Falls back to an empty string if git command fails or URL is not a GitHub URL. + """ + try: + result = subprocess.check_output( + ["git", "remote", "get-url", "origin"], + text=True, + stderr=subprocess.DEVNULL, + ) + url = result.strip() + + # Convert SSH URL to HTTPS if needed + if url.startswith("git@github.com:"): + url = url.replace("git@github.com:", "https://github.com/") + + # Remove .git suffix if present + if url.endswith(".git"): + url = url[:-4] + + # Verify it's a GitHub URL + if url.startswith("https://github.com/"): + return url + else: + return "" + except Exception: + return "" + + +def github_commit_link(commit_hash: str | None = None) -> str: + """Return the GitHub commit link for the given commit hash. + + Args: + commit_hash: The commit hash to link to. If None, uses current HEAD. + + Returns: + The GitHub commit URL, or empty string if unable to construct. + """ + if commit_hash is None: + commit_hash = current_commit() + + if commit_hash == "unknown": + return "" + + repo_url = github_repo_url() + if not repo_url: + return "" + + # Get the full commit hash for the link + try: + full_hash = subprocess.check_output( + ["git", "rev-parse", commit_hash], + text=True, + stderr=subprocess.DEVNULL, + ).strip() + return f"{repo_url}/commit/{full_hash}" + except Exception: + # Fallback to short hash if full hash fails + return f"{repo_url}/commit/{commit_hash}" diff --git a/src/template/utils/yayamlml.py b/src/template/utils/yayamlml.py new file mode 100644 index 0000000..52b2b6d --- /dev/null +++ b/src/template/utils/yayamlml.py @@ -0,0 +1,68 @@ +from pathlib import Path +from typing import Any + +import yaml + + +def safe_load( + preset_file: Path, + base: dict[str, Any], + include_paths: list[str | Path] | None = None, + visited: set[Path] | None = None, +): + """ + _include-capable replacement for yaml.safe_load + + Inject values from preset_file into a base dict. + Outer values overwrite included. + + See deep_merge for the rules. + """ + if not isinstance(base, dict): + raise TypeError("Base values should be dict (for in-place updates)") + visited = visited or set() + + if preset_file in visited: + raise ValueError(f"Circular include detected: {preset_file}") + visited.add(preset_file) + + with open(preset_file, encoding="utf-8") as fh: + loaded = yaml.safe_load(fh) or {} + + if "_include" in loaded: + includes = loaded.pop("_include") + + if isinstance(includes, str): + includes = [includes] + elif not isinstance(includes, list): + raise ValueError(f"_include must be a string or list, got {type(includes)}") + + for include_file in includes: + found = None + if include_file.startswith("./"): + found = include_file.parent() / include_file + else: + for path in include_paths: + include_path = Path(path) / include_file + if include_path.is_file(): + found = include_path + if not found: + raise FileNotFoundError(f"{include_file} not found in {include_paths}") + + # merging bottom values first + safe_load(found, base, include_paths, visited) + + # merge local values later + deep_merge(base, loaded) + + +def deep_merge(base: dict[str, Any], updates: dict[str, Any]): + for key, value in updates.items(): + if key in base and value is None: + del base[key] + elif key in base and isinstance(base[key], dict) and isinstance(value, dict): + deep_merge(base[key], value) + elif key in base and isinstance(base[key], list) and isinstance(value, list): + base[key].extend(value) + else: + base[key] = value From a1c8c322a10ccd363677a2d22f40acfef8a3af51 Mon Sep 17 00:00:00 2001 From: alexb <189858354+alexb-palisaderesearch@users.noreply.github.com> Date: Mon, 15 Sep 2025 16:47:00 +0300 Subject: [PATCH 03/14] Add config loader --- config/baseline.yaml | 9 ++++++ src/template/agent/config.py | 54 ++++++++++++++++++++++++++++++++++++ src/template/agent/env.py | 5 ++-- src/template/agent/main.py | 11 ++++---- 4 files changed, 72 insertions(+), 7 deletions(-) create mode 100644 config/baseline.yaml create mode 100644 src/template/agent/config.py diff --git a/config/baseline.yaml b/config/baseline.yaml new file mode 100644 index 0000000..9fad456 --- /dev/null +++ b/config/baseline.yaml @@ -0,0 +1,9 @@ +# _include: labs/hosts.yaml + +agent: + AGENT_MODEL: "o3-2025-04-16" + MAX_STEPS: 300 + +# container: +# IMAGE_NAME: "agent-image" +# CONTAINER_NAME: "agent-container" diff --git a/src/template/agent/config.py b/src/template/agent/config.py new file mode 100644 index 0000000..c1a28c2 --- /dev/null +++ b/src/template/agent/config.py @@ -0,0 +1,54 @@ +from __future__ import annotations + +from pathlib import Path + +from pydantic import BaseModel +from pydantic_settings import BaseSettings + +from ..utils import yayamlml + +"""Configuration settings for the autonomous agent stack. + +The file introduces a hierarchical configuration schema – each subsystem (agent, +controller, observer, etc.) gets its own Pydantic model. A top-level +:class:`Settings` aggregates these models and can be populated from environment +variables and/or YAML preset files. +""" + +ROOT_DIR = Path(__file__).parent.parent.parent.parent + +CONFIG_DIR = ROOT_DIR / "config" + + +class AgentSettings(BaseModel): + AGENT_MODEL: str + MAX_STEPS: int = 300 + + # TODO: add more settings and per-state prompts as needed + + +class Settings(BaseSettings): + def __init__(self, config_name: str = "baseline", **data) -> None: + """Load from env vars, then optionally merge YAML preset.""" + config_file = CONFIG_DIR / f"{config_name}.yaml" + if not config_file.is_file(): + available = [ + p.stem for p in CONFIG_DIR.glob("*.yaml") if not p.stem.startswith("_") + ] + raise FileNotFoundError( + f"Configuration '{config_name}' not found in {CONFIG_DIR}. Available: {available}" + ) + super_data = data.copy() + yayamlml.safe_load( + config_file, + base=super_data, + include_paths=[CONFIG_DIR], + ) + super().__init__(**super_data) + + agent: AgentSettings + # TODO: add more sections here + + class Config: + extra = "ignore" + arbitrary_types_allowed = True diff --git a/src/template/agent/env.py b/src/template/agent/env.py index 5dd689b..5b6eb8d 100644 --- a/src/template/agent/env.py +++ b/src/template/agent/env.py @@ -3,6 +3,8 @@ from dataclasses import dataclass from pathlib import Path +from .config import Settings + @dataclass class Env: @@ -10,7 +12,6 @@ class Env: Data here will *not* be a part of a run history. """ + settings: Settings run_path: Path - readme: str - # TODO: add handles and capabilities here diff --git a/src/template/agent/main.py b/src/template/agent/main.py index bb0ead7..86b76ef 100644 --- a/src/template/agent/main.py +++ b/src/template/agent/main.py @@ -3,17 +3,17 @@ import argparse import asyncio from contextlib import nullcontext -import os from pathlib import Path from shutil import copytree -from ipdb import launch_ipdb_on_exception import logfire +from ipdb import launch_ipdb_on_exception from pydantic_graph import End, Graph from pydantic_graph.persistence.file import FileStatePersistence -from . import nodes from ..utils import git +from . import nodes +from .config import Settings from .env import Env from .state import State @@ -26,10 +26,11 @@ def main(): parser.add_argument("--no-logfire", action="store_true") parser.add_argument("--debug", action="store_true") parser.add_argument("--restore", metavar="DIR", help="Run path to resume/fork.") - parser.add_argument("readme") + parser.add_argument("--config") # TODO: add more fancy args args = parser.parse_args() + settings = Settings(config_name=args.config) logfire.configure( send_to_logfire=not args.no_logfire, @@ -78,8 +79,8 @@ def main(): # TODO: Start the requested services and put their handles here deps = Env( + settings=settings, run_path=run_path, - readme=args.readme, ) asyncio.run(agent(deps)) From 6e571e28690405ba6663aff8289be96b7e795373 Mon Sep 17 00:00:00 2001 From: alexb <189858354+alexb-palisaderesearch@users.noreply.github.com> Date: Mon, 15 Sep 2025 16:58:31 +0300 Subject: [PATCH 04/14] Fix stuff --- pyproject.toml | 2 +- src/template/agent/main.py | 2 +- src/template/utils/yayamlml.py | 1 + 3 files changed, 3 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 8340df8..1c7b517 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -10,7 +10,7 @@ dependencies = [ "matplotlib>=3.10.0", "numpy>=2.2.2", "pydantic-ai>=1.0.2", - "python-ulid[pydantic,pydatnic]>=3.1.0", + "python-ulid[pydantic]>=3.1.0", ] [dependency-groups] dev = [ diff --git a/src/template/agent/main.py b/src/template/agent/main.py index 86b76ef..bf50f0d 100644 --- a/src/template/agent/main.py +++ b/src/template/agent/main.py @@ -68,7 +68,7 @@ def main(): if args.restore: with logfire.span(f"Restoring from {args.restore}"): old_path = Path(args.restore) - if not old_path.exists: + if not old_path.exists(): raise Exception(f"Restore path does not exist: {args.restore}") if not old_path.is_dir(): raise Exception(f"Restore path is not a directory: {args.restore}") diff --git a/src/template/utils/yayamlml.py b/src/template/utils/yayamlml.py index 52b2b6d..f690dc8 100644 --- a/src/template/utils/yayamlml.py +++ b/src/template/utils/yayamlml.py @@ -21,6 +21,7 @@ def safe_load( if not isinstance(base, dict): raise TypeError("Base values should be dict (for in-place updates)") visited = visited or set() + include_paths = include_paths or list() if preset_file in visited: raise ValueError(f"Circular include detected: {preset_file}") From 905b6bc616a46adf5dfbef83b736349db1a1150f Mon Sep 17 00:00:00 2001 From: alexb <189858354+alexb-palisaderesearch@users.noreply.github.com> Date: Wed, 17 Sep 2025 20:25:46 +0300 Subject: [PATCH 05/14] agent: add a mini-howto --- src/template/agent/README.md | 34 +++++++++++++++++++++++++++++++++- 1 file changed, 33 insertions(+), 1 deletion(-) diff --git a/src/template/agent/README.md b/src/template/agent/README.md index 7064491..fc9e146 100644 --- a/src/template/agent/README.md +++ b/src/template/agent/README.md @@ -1 +1,33 @@ -# TBD +# PydanticAI agent + +## Overall flow + +- Setup + - Process args + - Load config + - Prepare new run metadata + - (when requested) Restore environment from a previous run + - Pack handles to the Env +- Run + - (when requested) Restore state from a previous run + - Initialize the state machine + - Run the state machine step-by-step until completion (or error/interruption) +- Extract results + - Inspect the run trace, files and the other stuff produced by the run. + +Every part has some extension points marked with `TODO:` comments. + +## Mini-howto + +- To run the agent use `uv run agent` or just `agent` with an appropriate arguments (`--help` is a thing). + * ⚠️ Copy and tweak `.env.example` before doing it first time. +- To specialize this template, add nodes, node states and code to Node's `run` method. + * To use LLMs, instantiate `Agent` objects with prompts, tools and providing the execution context with `deps`. +- To describe your runtime environment, add fields for handlers to the `Env` type. + * Populate them in the `main` function. + * Use context managers if the environment needs a cleanup (eg. terminating services, removing temporary files). +- To make scenarios customizeable use the `Settings` type and config files. +- To resume an old run, point the `--restore` argument to its directory. + * ⚠️ This will fork the run. + That means, it will get a new LogFire trace. + Which, in turn, will give it a new `run_id` and a new run directory (old fields would be carried over). From 233d009ba8ee7712450a9ab2fb5a5cd34dd47f8c Mon Sep 17 00:00:00 2001 From: alexb <189858354+alexb-palisaderesearch@users.noreply.github.com> Date: Wed, 17 Sep 2025 23:57:33 +0300 Subject: [PATCH 06/14] agent: some fixes --- config/smoke.yaml | 4 ++++ src/template/agent/config.py | 8 -------- src/template/agent/env.py | 1 + src/template/agent/main.py | 17 +++++++++++++---- src/template/utils/git.py | 6 ++---- 5 files changed, 20 insertions(+), 16 deletions(-) create mode 100644 config/smoke.yaml diff --git a/config/smoke.yaml b/config/smoke.yaml new file mode 100644 index 0000000..47bf109 --- /dev/null +++ b/config/smoke.yaml @@ -0,0 +1,4 @@ +_include: baseline.yaml + +agent: + MAX_STEPS: 10 diff --git a/src/template/agent/config.py b/src/template/agent/config.py index c1a28c2..02dc610 100644 --- a/src/template/agent/config.py +++ b/src/template/agent/config.py @@ -7,14 +7,6 @@ from ..utils import yayamlml -"""Configuration settings for the autonomous agent stack. - -The file introduces a hierarchical configuration schema – each subsystem (agent, -controller, observer, etc.) gets its own Pydantic model. A top-level -:class:`Settings` aggregates these models and can be populated from environment -variables and/or YAML preset files. -""" - ROOT_DIR = Path(__file__).parent.parent.parent.parent CONFIG_DIR = ROOT_DIR / "config" diff --git a/src/template/agent/env.py b/src/template/agent/env.py index 5b6eb8d..2399ce4 100644 --- a/src/template/agent/env.py +++ b/src/template/agent/env.py @@ -15,3 +15,4 @@ class Env: settings: Settings run_path: Path # TODO: add handles and capabilities here + readme: str = "example" diff --git a/src/template/agent/main.py b/src/template/agent/main.py index bf50f0d..c33cf8f 100644 --- a/src/template/agent/main.py +++ b/src/template/agent/main.py @@ -28,7 +28,7 @@ def main(): parser.add_argument("--restore", metavar="DIR", help="Run path to resume/fork.") parser.add_argument("--config") - # TODO: add more fancy args + # TODO: add more args for controlling the script itself args = parser.parse_args() settings = Settings(config_name=args.config) @@ -37,12 +37,14 @@ def main(): scrubbing=False, ) logfire.instrument_openai() - # TODO: instrument other stuff like model providers + # TODO: instrument other model providers and APIs + # https://ai.pydantic.dev/#instrumentation-with-pydantic-logfire branch_name = git.current_branch() or "unknown" commit_hash = git.current_commit() or "unknown" run_name = f"run-{branch_name}-{commit_hash}" run_attrs = { + "args": args, # TODO: add run metadata here } if url := git.github_commit_link(commit_hash): @@ -57,7 +59,8 @@ def main(): (launch_ipdb_on_exception if args.debug else nullcontext)(), # TODO: add more resource-managing contexts here ): - # Your unique identifier for this run (make a fresh one for forks) + # Your unique identifier for this run (the series of steps tracked as one closed block). + # NB: Restored/forked runs will get a fresh one too. run_id = f"{root.context.trace_id:032x}" # New runs appear on the bottom, automatically "sorted" by timestamp @@ -131,6 +134,9 @@ async def agent(deps: Env): persistence=persistence, ) + # Hard limit for steps in this run (i.e. without considering snapshot history from the restored runs) + steps_remaining = deps.settings.agent.MAX_STEPS + # Run the graph to completion while True: async with graph.iter_from_persistence(persistence, deps=deps) as running: @@ -138,9 +144,12 @@ async def agent(deps: Env): # TODO: add top-level processing related to the running instance logfire.debug(f"Running state: {running.state}") - # TODO: check the extra termination conditions if isinstance(next, End): break + # TODO: check the extra termination conditions + steps_remaining -= 1 + if not steps_remaining: + break pass # State snapshot is taken here and recorded in the file diff --git a/src/template/utils/git.py b/src/template/utils/git.py index 3c37b0c..a2c1109 100644 --- a/src/template/utils/git.py +++ b/src/template/utils/git.py @@ -23,10 +23,8 @@ def current_branch() -> str: def ensure_experiment_branch() -> str: - """Abort execution if current branch does not start with ``experiment``. - - Returns the branch name when the pre‑condition passes. Otherwise, prints an - instructional message and terminates the script with exit code ``1``. + """ + Abort execution if current branch does not start with ``experiment``. """ branch = current_branch() From b6fbac4412c6e271dd594644c8d87b4db1c9a6e7 Mon Sep 17 00:00:00 2001 From: alexb <189858354+alexb-palisaderesearch@users.noreply.github.com> Date: Thu, 18 Sep 2025 00:03:07 +0300 Subject: [PATCH 07/14] Add worktree scripts --- pyproject.toml | 3 + src/scripts/_clean_worktrees_parser.py | 15 +++ src/scripts/_fork_worktree_parser.py | 41 ++++++ src/scripts/clean_worktrees.py | 177 +++++++++++++++++++++++++ src/scripts/fork_worktree.py | 153 +++++++++++++++++++++ uv.lock | 4 +- 6 files changed, 392 insertions(+), 1 deletion(-) create mode 100644 src/scripts/_clean_worktrees_parser.py create mode 100644 src/scripts/_fork_worktree_parser.py create mode 100644 src/scripts/clean_worktrees.py create mode 100644 src/scripts/fork_worktree.py diff --git a/pyproject.toml b/pyproject.toml index 1c7b517..48d574b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -16,6 +16,7 @@ dependencies = [ dev = [ "ty>=0.0.1a18", "ruff>=0.12.5", + "argcomplete>=3.6.2", ] [build-system] @@ -26,6 +27,8 @@ build-backend = "hatchling.build" sources = ["src"] [project.scripts] +fork-worktree = "scripts.fork_worktree:main" +clean-worktrees = "scripts.clean_worktrees:main" hello = "template.hello:main" agent = "template.agent.main:main" diff --git a/src/scripts/_clean_worktrees_parser.py b/src/scripts/_clean_worktrees_parser.py new file mode 100644 index 0000000..f61d420 --- /dev/null +++ b/src/scripts/_clean_worktrees_parser.py @@ -0,0 +1,15 @@ +import argparse + + +def build_parser() -> argparse.ArgumentParser: + """Build the argument parser for the clean-worktrees command.""" + parser = argparse.ArgumentParser( + description="Remove all git worktrees created by fork-worktree matching the 'worktree-*' pattern." + ) + parser.add_argument( + "--force", + "-f", + action="store_true", + help="Skip confirmation prompt and remove all matching worktrees.", + ) + return parser diff --git a/src/scripts/_fork_worktree_parser.py b/src/scripts/_fork_worktree_parser.py new file mode 100644 index 0000000..0efab77 --- /dev/null +++ b/src/scripts/_fork_worktree_parser.py @@ -0,0 +1,41 @@ +import argparse + +DEFAULT_PREFIX = "experiment" + + +def build_parser() -> argparse.ArgumentParser: + """Build the argument parser for the fork-worktree command.""" + parser = argparse.ArgumentParser( + description="Create one or more worktrees branching from the current branch.", + ) + parser.add_argument( + "-r", + "--repeat", + type=int, + default=1, + help="Number of worktrees to create (default: 1).", + ) + parser.add_argument( + "--prefix", + default=DEFAULT_PREFIX, + help=( + "Prefix for new branch names. Default: 'experiment'. " + "Branch name format will be: ----" + ), + ) + parser.add_argument( + "--path", + help="Base destination directory. Defaults to directory *above* repo root.", + ) + parser.add_argument( + "--no-open", + action="store_true", + help="Don't open each worktree with 'cursor .' after creation (default: open)", + ) + parser.add_argument( + "--names", + nargs="+", + default=[], + help="Custom names for the branches. If fewer names than --repeat, names will be reused or defaults applied.", + ) + return parser diff --git a/src/scripts/clean_worktrees.py b/src/scripts/clean_worktrees.py new file mode 100644 index 0000000..70032fa --- /dev/null +++ b/src/scripts/clean_worktrees.py @@ -0,0 +1,177 @@ +#!/usr/bin/env python3 + +"""clean_worktrees: Utility script to remove all git worktrees created by fork-worktree. + +WARNING: This script removes worktrees and their associated directories if they match the +'worktree-*' naming convention. Use with caution. +It will ask for confirmation before deleting anything. +""" + +import shutil +import subprocess +import sys +from pathlib import Path + +import argcomplete + +from ._clean_worktrees_parser import build_parser + +try: + REPO_ROOT_RAW = subprocess.check_output( + "git rev-parse --show-toplevel", shell=True, text=True, stderr=subprocess.PIPE + ).strip() + if not REPO_ROOT_RAW: + raise ValueError("git rev-parse returned empty string") + REPO_ROOT = Path(REPO_ROOT_RAW).resolve() +except (subprocess.CalledProcessError, FileNotFoundError, ValueError) as e: + print("Error: Failed to determine git repository root.", file=sys.stderr) + print(f"Reason: {e}", file=sys.stderr) + print("Please run this script from within a git repository.", file=sys.stderr) + sys.exit(1) + + +def sh(cmd: str, check: bool = True) -> subprocess.CompletedProcess: + """Run a shell command, echoing it. Optionally abort on error.""" + print(f"$ {cmd}") + result = subprocess.run( + cmd, shell=True, capture_output=True, text=True, check=check + ) + return result + + +def get_worktree_paths() -> list[Path]: + """Get a list of paths for managed worktrees, excluding the main one.""" + result = sh("git worktree list --porcelain", check=False) + if result.returncode != 0: + print( + f"Warning: 'git worktree list' failed. Stderr: {result.stderr.strip()}", + file=sys.stderr, + ) + return [] + + worktree_paths = [] + current_path_str = None + is_main_worktree = False + + for line in result.stdout.strip().split("\n"): + if line.startswith("worktree "): + current_path_str = line.split(" ", 1)[1] + is_main_worktree = False + try: + if Path(current_path_str).resolve() == REPO_ROOT: + is_main_worktree = True + except Exception: + pass + + elif line.strip() == "": + if current_path_str and not is_main_worktree: + current_path = Path(current_path_str) + if current_path.name.startswith("worktree-"): + worktree_paths.append(current_path) + + current_path_str = None + is_main_worktree = False + + if current_path_str and not is_main_worktree: + current_path = Path(current_path_str) + if current_path.name.startswith("worktree-"): + worktree_paths.append(current_path) + + return worktree_paths + + +def main() -> None: + """Entry point for the script.""" + parser = build_parser() + + if "argcomplete" in sys.modules: + argcomplete.autocomplete(parser) + + args = parser.parse_args() + + print("Looking for git worktrees...") + + try: + worktree_paths = get_worktree_paths() + except Exception as e: + print(f"Error getting worktree list: {e}", file=sys.stderr) + print("Are you in a git repository?", file=sys.stderr) + sys.exit(1) + + if not worktree_paths: + print("No managed 'worktree-*' worktrees found to remove.") # Clarified message + sys.exit(0) + + print("Found the following managed worktrees to remove:") + for path in worktree_paths: + print(f" - {path}") + + if not args.force: + try: + confirm = input( + "Are you sure you want to remove all these worktrees and their directories? [y/N]: " + ) + except EOFError: + confirm = "n" + + if confirm.lower() != "y": + print("Aborting.") + sys.exit(0) + else: + print("\nForced removal requested. Proceeding without confirmation.") + + print("\nRemoving worktrees...") + removed_count = 0 + failed_count = 0 + + for path in worktree_paths: + print(f"\nProcessing worktree at: {path}") + + if not path.exists(): + print( + f"Warning: Directory {path} does not exist. Removing worktree entry only." + ) + + remove_cmd = f'git worktree remove --force "{path}"' + result = sh(remove_cmd, check=False) + + if result.returncode == 0: + print(f"Successfully removed git worktree entry for {path}") + + if path.exists(): + print(f"Removing directory {path}...") + try: + if path.resolve() == REPO_ROOT.resolve(): + print( + f"Safety check: Preventing removal of main repository directory ({path}).", + file=sys.stderr, + ) + failed_count += 1 + continue + + shutil.rmtree(path) + print(f"Successfully removed directory {path}") + removed_count += 1 + except OSError as e: + print(f"Error removing directory {path}: {e}", file=sys.stderr) + print("You might need to remove it manually.", file=sys.stderr) + failed_count += 1 + else: + removed_count += 1 + + else: + print(f"Failed to remove git worktree entry for {path}. Stderr:") + print(result.stderr.strip(), file=sys.stderr) + failed_count += 1 + + print("\n---------------------") + print(f"Cleanup complete. {removed_count} worktrees removed.") + if failed_count > 0: + print( + f"{failed_count} worktrees failed to remove completely. Check logs above." + ) + sys.exit(1) + + +if __name__ == "__main__": + main() diff --git a/src/scripts/fork_worktree.py b/src/scripts/fork_worktree.py new file mode 100644 index 0000000..0416ba1 --- /dev/null +++ b/src/scripts/fork_worktree.py @@ -0,0 +1,153 @@ +#!/usr/bin/env python3 + +"""fork_worktree: utility script to create one or many git worktree forks. + +Usage: + fork-worktree [--prefix PREFIX] [--path PATH] [--names NAME1 NAME2 ...] [-r N] + +Examples: + # Create one worktree from current branch + fork-worktree + + # Create three worktrees with custom names (no need for -r) + fork-worktree --names feature-a feature-b feature-c + + # Create 5 worktrees based on one name (auto-names 4 additional ones) + fork-worktree -r 5 --names feature-a + + # Custom prefix and base path + fork-worktree --prefix custom-exp --path /tmp --names my-experiment +""" + +import os +import shutil +import subprocess +import sys +from datetime import datetime +from pathlib import Path + +import argcomplete + +from ._fork_worktree_parser import build_parser + +REPO_ROOT = Path.cwd() + + +def sh(cmd: str) -> subprocess.CompletedProcess: + """Run a shell command, echoing it. Abort on error.""" + print(f"$ {cmd}") + result = subprocess.run(cmd, shell=True, check=True) + return result + + +def ensure_git_repo() -> None: + if not (REPO_ROOT / ".git").exists(): + print("Error: current directory is not a git repository root.", file=sys.stderr) + sys.exit(1) + + +def git_current_branch() -> str: + """Return the name of the currently checked‑out branch.""" + return ( + subprocess.check_output("git rev-parse --abbrev-ref HEAD", shell=True) + .decode() + .strip() + ) + + +def git_short_hash(branch: str) -> str: + """Return the short hash of the given branch.""" + return ( + subprocess.check_output(f"git rev-parse --short {branch}", shell=True) + .decode() + .strip() + ) + + +def sanitize_name(name: str) -> str: + """Convert a name to a git-friendly format.""" + return "".join(c if c.isalnum() else "-" for c in name).strip("-") + + +def main(argv: list[str] | None = None) -> None: # noqa: D401 + """Entry point for script.""" + parser = build_parser() + + if "argcomplete" in sys.modules: + argcomplete.autocomplete(parser) + + args = parser.parse_args(argv) + + ensure_git_repo() + + username = os.getenv("USER") or os.getlogin() + prefix = args.prefix + + base_dest = Path(args.path).expanduser() if args.path else REPO_ROOT.parent + base_branch = git_current_branch() + commit_hash = git_short_hash(base_branch) + + timestamp = datetime.now().strftime("%Y%m%d-%H%M%S") + + custom_names = args.names + + num_worktrees = max(args.repeat, len(custom_names)) if custom_names else args.repeat + + for i in range(num_worktrees): + custom_name_suffix = None + + if custom_names: + if i < len(custom_names): + custom_name_suffix = sanitize_name(custom_names[i]) + else: + suffix_index = i + 1 - len(custom_names) + custom_name_suffix = f"{sanitize_name(custom_names[-1])}-{suffix_index}" + else: + if num_worktrees > 1: + custom_name_suffix = str(i + 1) + + base_branch_part = f"{prefix}-{username}-{timestamp}-{commit_hash}" + + branch_name = ( + f"{base_branch_part}-{custom_name_suffix}" + if custom_name_suffix + else base_branch_part + ) + + dir_name = f"worktree-{branch_name}" + dest = base_dest / dir_name + + sh(f"git branch {branch_name} {base_branch}") + + sh(f"git worktree add {dest} {branch_name}") + + env_src = REPO_ROOT / ".env" + if env_src.exists(): + sh(f"cp {env_src} {dest}/.env") + + venv_dest = dest / ".venv" + + python3 = shutil.which("python3") + if python3: + print(f"Creating minimal .venv with {python3} ...") + subprocess.run( + [python3, "-m", "venv", str(venv_dest)], cwd=dest, check=True + ) + else: + print("Warning: Could not find Python to create .venv") + + sh(f"direnv allow {dest}") + + if not args.no_open: + subprocess.Popen( + ["cursor", "."], + cwd=dest, + stdout=subprocess.DEVNULL, + stderr=subprocess.DEVNULL, + ) + + print(f"Worktree created at {dest} (branch '{branch_name}')") + + +if __name__ == "__main__": + main() diff --git a/uv.lock b/uv.lock index a12a81d..08c38be 100644 --- a/uv.lock +++ b/uv.lock @@ -1848,6 +1848,7 @@ dependencies = [ [package.dev-dependencies] dev = [ + { name = "argcomplete" }, { name = "ruff" }, { name = "ty" }, ] @@ -1859,11 +1860,12 @@ requires-dist = [ { name = "matplotlib", specifier = ">=3.10.0" }, { name = "numpy", specifier = ">=2.2.2" }, { name = "pydantic-ai", specifier = ">=1.0.2" }, - { name = "python-ulid", extras = ["pydantic", "pydatnic"], specifier = ">=3.1.0" }, + { name = "python-ulid", extras = ["pydantic"], specifier = ">=3.1.0" }, ] [package.metadata.requires-dev] dev = [ + { name = "argcomplete", specifier = ">=3.6.2" }, { name = "ruff", specifier = ">=0.12.5" }, { name = "ty", specifier = ">=0.0.1a18" }, ] From e79cb890ed078bc5fa139acee386ba6abbb1ccb8 Mon Sep 17 00:00:00 2001 From: alexb <189858354+alexb-palisaderesearch@users.noreply.github.com> Date: Thu, 18 Sep 2025 00:27:41 +0300 Subject: [PATCH 08/14] Add arg help, --no-git and git enforcement --- src/template/agent/main.py | 30 ++++++++++++++++++++++++++---- 1 file changed, 26 insertions(+), 4 deletions(-) diff --git a/src/template/agent/main.py b/src/template/agent/main.py index c33cf8f..200e3a7 100644 --- a/src/template/agent/main.py +++ b/src/template/agent/main.py @@ -5,6 +5,7 @@ from contextlib import nullcontext from pathlib import Path from shutil import copytree +from glob import glob import logfire from ipdb import launch_ipdb_on_exception @@ -23,15 +24,36 @@ def main(): Squeeze the external world and distill into the Env fields. """ parser = argparse.ArgumentParser(description="Run me") - parser.add_argument("--no-logfire", action="store_true") - parser.add_argument("--debug", action="store_true") - parser.add_argument("--restore", metavar="DIR", help="Run path to resume/fork.") - parser.add_argument("--config") + parser.add_argument( + "--no-git", + action="store_true", + help="Do not track git state, check branch names and commit/push.", + ) + parser.add_argument( + "--no-logfire", action="store_true", help="Run with only local logging." + ) + parser.add_argument( + "--debug", + action="store_true", + help="Drop to a debugger on unhandled exceptions.", + ) + parser.add_argument( + "--restore", + metavar="DIR", + help="A path of a previous run to resume/fork. A new run id will be generated.", + ) + configs = [] + for path in Path("config").glob("*.yaml"): + configs.append(path.name.split(".yaml")[0]) + parser.add_argument("config", choices=configs, help="Config name to use.") # TODO: add more args for controlling the script itself args = parser.parse_args() settings = Settings(config_name=args.config) + if not args.no_git: + git.ensure_experiment_branch() + logfire.configure( send_to_logfire=not args.no_logfire, scrubbing=False, From 822f038ae168c9d2f480032b5b0fa33def441ef9 Mon Sep 17 00:00:00 2001 From: alexb <189858354+alexb-palisaderesearch@users.noreply.github.com> Date: Thu, 18 Sep 2025 00:32:43 +0300 Subject: [PATCH 09/14] Enable autocommit --- src/template/agent/main.py | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/src/template/agent/main.py b/src/template/agent/main.py index 200e3a7..11cbfa7 100644 --- a/src/template/agent/main.py +++ b/src/template/agent/main.py @@ -3,9 +3,9 @@ import argparse import asyncio from contextlib import nullcontext +from datetime import datetime from pathlib import Path from shutil import copytree -from glob import glob import logfire from ipdb import launch_ipdb_on_exception @@ -85,6 +85,12 @@ def main(): # NB: Restored/forked runs will get a fresh one too. run_id = f"{root.context.trace_id:032x}" + if not args.no_git_ops: + with logfire.span("Preparing git commit", _level="debug"): + timestamp = datetime.now().strftime("%Y%m%d_%H%M%S") + commit_msg = f"run-{timestamp}-{run_id}" + git.commit_and_push(commit_msg) + # New runs appear on the bottom, automatically "sorted" by timestamp run_path = Path("runs") / Path(run_id) run_path.mkdir(exist_ok=True, parents=True) From 40c363f9984adbc23aad9ebf8b2e92cb572b5e91 Mon Sep 17 00:00:00 2001 From: alexb <189858354+alexb-palisaderesearch@users.noreply.github.com> Date: Thu, 18 Sep 2025 00:49:22 +0300 Subject: [PATCH 10/14] Unslopify git scripts --- src/scripts/clean_worktrees.py | 20 +++++++++----------- src/scripts/fork_worktree.py | 20 ++++++++++---------- 2 files changed, 19 insertions(+), 21 deletions(-) diff --git a/src/scripts/clean_worktrees.py b/src/scripts/clean_worktrees.py index 70032fa..cd382f7 100644 --- a/src/scripts/clean_worktrees.py +++ b/src/scripts/clean_worktrees.py @@ -18,7 +18,9 @@ try: REPO_ROOT_RAW = subprocess.check_output( - "git rev-parse --show-toplevel", shell=True, text=True, stderr=subprocess.PIPE + ["git", "rev-parse", "--show-toplevel"], + text=True, + stderr=subprocess.PIPE, ).strip() if not REPO_ROOT_RAW: raise ValueError("git rev-parse returned empty string") @@ -30,18 +32,16 @@ sys.exit(1) -def sh(cmd: str, check: bool = True) -> subprocess.CompletedProcess: +def sh(args: list, **kwargs) -> subprocess.CompletedProcess: """Run a shell command, echoing it. Optionally abort on error.""" - print(f"$ {cmd}") - result = subprocess.run( - cmd, shell=True, capture_output=True, text=True, check=check - ) - return result + args_: list[str] = [str(a) for a in args] + print("$", " ".join(args_)) + return subprocess.run(args_, capture_output=True, text=True, **kwargs) def get_worktree_paths() -> list[Path]: """Get a list of paths for managed worktrees, excluding the main one.""" - result = sh("git worktree list --porcelain", check=False) + result = sh(["git", "worktree", "list", "--porcelain"], check=False) if result.returncode != 0: print( f"Warning: 'git worktree list' failed. Stderr: {result.stderr.strip()}", @@ -132,9 +132,7 @@ def main() -> None: f"Warning: Directory {path} does not exist. Removing worktree entry only." ) - remove_cmd = f'git worktree remove --force "{path}"' - result = sh(remove_cmd, check=False) - + result = sh(["git", "worktree", "remove", "--force", path], check=False) if result.returncode == 0: print(f"Successfully removed git worktree entry for {path}") diff --git a/src/scripts/fork_worktree.py b/src/scripts/fork_worktree.py index 0416ba1..33ef07c 100644 --- a/src/scripts/fork_worktree.py +++ b/src/scripts/fork_worktree.py @@ -33,11 +33,11 @@ REPO_ROOT = Path.cwd() -def sh(cmd: str) -> subprocess.CompletedProcess: +def sh(args: list, **kwargs) -> subprocess.CompletedProcess: """Run a shell command, echoing it. Abort on error.""" - print(f"$ {cmd}") - result = subprocess.run(cmd, shell=True, check=True) - return result + args_ = [str(a) for a in args] + print("$", " ".join(args_)) + return subprocess.run(args_, check=True, **kwargs) def ensure_git_repo() -> None: @@ -49,7 +49,7 @@ def ensure_git_repo() -> None: def git_current_branch() -> str: """Return the name of the currently checked‑out branch.""" return ( - subprocess.check_output("git rev-parse --abbrev-ref HEAD", shell=True) + subprocess.check_output(["git", "rev-parse", "--abbrev-ref", "HEAD"]) .decode() .strip() ) @@ -58,7 +58,7 @@ def git_current_branch() -> str: def git_short_hash(branch: str) -> str: """Return the short hash of the given branch.""" return ( - subprocess.check_output(f"git rev-parse --short {branch}", shell=True) + subprocess.check_output(["git", "rev-parse", "--short", branch]) .decode() .strip() ) @@ -117,13 +117,13 @@ def main(argv: list[str] | None = None) -> None: # noqa: D401 dir_name = f"worktree-{branch_name}" dest = base_dest / dir_name - sh(f"git branch {branch_name} {base_branch}") + sh(["git", "branch", branch_name, base_branch]) - sh(f"git worktree add {dest} {branch_name}") + sh(["git", "worktree", "add", dest, branch_name]) env_src = REPO_ROOT / ".env" if env_src.exists(): - sh(f"cp {env_src} {dest}/.env") + sh(["cp", env_src, f"{dest}/.env"]) venv_dest = dest / ".venv" @@ -136,7 +136,7 @@ def main(argv: list[str] | None = None) -> None: # noqa: D401 else: print("Warning: Could not find Python to create .venv") - sh(f"direnv allow {dest}") + sh(["direnv", "allow", dest]) if not args.no_open: subprocess.Popen( From 99a2a70ae51eeda85bf4009642d5973eb3d2f9b4 Mon Sep 17 00:00:00 2001 From: alexb <189858354+alexb-palisaderesearch@users.noreply.github.com> Date: Thu, 18 Sep 2025 15:02:27 +0300 Subject: [PATCH 11/14] Fix arg name --- src/template/agent/main.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/template/agent/main.py b/src/template/agent/main.py index 11cbfa7..26804da 100644 --- a/src/template/agent/main.py +++ b/src/template/agent/main.py @@ -85,7 +85,7 @@ def main(): # NB: Restored/forked runs will get a fresh one too. run_id = f"{root.context.trace_id:032x}" - if not args.no_git_ops: + if not args.no_git: with logfire.span("Preparing git commit", _level="debug"): timestamp = datetime.now().strftime("%Y%m%d_%H%M%S") commit_msg = f"run-{timestamp}-{run_id}" From 358ce2bede84eaa8968c04a1f03f714f4e419f36 Mon Sep 17 00:00:00 2001 From: alexb <189858354+alexb-palisaderesearch@users.noreply.github.com> Date: Thu, 18 Sep 2025 15:02:45 +0300 Subject: [PATCH 12/14] Move snapshot restoring to a function --- src/template/agent/main.py | 45 +++++++++++++++++++++----------------- 1 file changed, 25 insertions(+), 20 deletions(-) diff --git a/src/template/agent/main.py b/src/template/agent/main.py index 26804da..1fc1d7c 100644 --- a/src/template/agent/main.py +++ b/src/template/agent/main.py @@ -133,29 +133,10 @@ async def agent(deps: Env): persistence = FileStatePersistence(history_path) persistence.set_graph_types(graph) if snapshots := await persistence.load_all(): - # TODO: add snapshot filtering like "drop N last steps" - node, state = None, None - logfire.debug(f"Loaded {len(snapshots)} snapshots from {history_path}") - for snapshot in reversed(snapshots): - if snapshot.kind == "end": - logfire.debug("Resuming an ended run") - continue - if snapshot.kind == "node": - node = snapshot.node - if isinstance(node, End): - logfire.debug(f"Skipping End node {snapshot.id}") - continue - logfire.debug(f"Restoring from snapshot {snapshot.id}") - state = snapshot.state - break - if node is None or state is None: - raise RuntimeError( - f"No viable snapshots in the persistence file {history_path}" - ) + node, state = restore_snapshot(snapshots, history_path) else: node = start() state = State() - await graph.initialize( node=node, state=state, @@ -182,5 +163,29 @@ async def agent(deps: Env): pass # State snapshot is taken here and recorded in the file +def restore_snapshot(snapshots: list, history_path: Path): + # TODO: add snapshot filtering like "drop N last steps" + node = None + state: State | None = None + logfire.debug(f"Loaded {len(snapshots)} snapshots from {history_path}") + for snapshot in reversed(snapshots): + if snapshot.kind == "end": + logfire.debug("Resuming an ended run") + continue + if snapshot.kind == "node": + node = snapshot.node + if isinstance(node, End): + logfire.debug(f"Skipping End node {snapshot.id}") + continue + logfire.debug(f"Restoring from snapshot {snapshot.id}") + state = snapshot.state + break + if node is None or state is None: + raise RuntimeError( + f"No viable snapshots in the persistence file {history_path}" + ) + return node, state + + if __name__ == "__main__": main() From 8aae891abab771e3e600d50b41dafa72c99df59d Mon Sep 17 00:00:00 2001 From: alexb <189858354+alexb-palisaderesearch@users.noreply.github.com> Date: Thu, 18 Sep 2025 15:59:37 +0300 Subject: [PATCH 13/14] Get full git hash, shorten when presenting --- src/template/agent/main.py | 5 ++--- src/template/utils/git.py | 2 +- 2 files changed, 3 insertions(+), 4 deletions(-) diff --git a/src/template/agent/main.py b/src/template/agent/main.py index 1fc1d7c..6273bdd 100644 --- a/src/template/agent/main.py +++ b/src/template/agent/main.py @@ -64,10 +64,9 @@ def main(): branch_name = git.current_branch() or "unknown" commit_hash = git.current_commit() or "unknown" - run_name = f"run-{branch_name}-{commit_hash}" + run_name = f"run-{branch_name}-{commit_hash[:8]}" run_attrs = { - "args": args, - # TODO: add run metadata here + # TODO: add LogFire run metadata here } if url := git.github_commit_link(commit_hash): run_attrs["github_commit_link"] = url diff --git a/src/template/utils/git.py b/src/template/utils/git.py index a2c1109..6891d92 100644 --- a/src/template/utils/git.py +++ b/src/template/utils/git.py @@ -75,7 +75,7 @@ def current_commit() -> str: """Return the short hash of the current git HEAD commit.""" try: result = subprocess.check_output( - ["git", "rev-parse", "--short", "HEAD"], + ["git", "rev-parse", "HEAD"], text=True, stderr=subprocess.DEVNULL, ) From e1f51c9274e854bb9e71869f13262083210b6555 Mon Sep 17 00:00:00 2001 From: alexb <189858354+alexb-palisaderesearch@users.noreply.github.com> Date: Thu, 18 Sep 2025 16:37:42 +0300 Subject: [PATCH 14/14] Add metadata store/propagation --- src/template/agent/README.md | 2 +- src/template/agent/env.py | 25 +++++++++++++++++++++++++ src/template/agent/main.py | 22 +++++++++++++++++++++- 3 files changed, 47 insertions(+), 2 deletions(-) diff --git a/src/template/agent/README.md b/src/template/agent/README.md index fc9e146..ffd5ef4 100644 --- a/src/template/agent/README.md +++ b/src/template/agent/README.md @@ -6,7 +6,7 @@ - Process args - Load config - Prepare new run metadata - - (when requested) Restore environment from a previous run + - Create or restore environment - Pack handles to the Env - Run - (when requested) Restore state from a previous run diff --git a/src/template/agent/env.py b/src/template/agent/env.py index 2399ce4..8d99db3 100644 --- a/src/template/agent/env.py +++ b/src/template/agent/env.py @@ -2,6 +2,9 @@ from dataclasses import dataclass from pathlib import Path +from typing import Any + +from pydantic import BaseModel, Field from .config import Settings @@ -16,3 +19,25 @@ class Env: run_path: Path # TODO: add handles and capabilities here readme: str = "example" + + +class Metadata(BaseModel): + """ + Run metadata to be stored alongside snapshots. + Can be used to persist extra information outside of graph state or parameters needed to replicate the environment when restoring. + """ + + # Git commit that produced the code and config for this run + commit_hash: str + + # Parsed CLI args used to start this run + args: dict[str, Any] + + # Current run_id (should match the directory name) + run_id: str + + # A chain of run_ids that were used in restoring + # (empty = fresh run) + ancestor_ids: list[str] = Field(default_factory=list) + + # TODO: add more things to preseve and track across runs diff --git a/src/template/agent/main.py b/src/template/agent/main.py index 6273bdd..5ad0ae4 100644 --- a/src/template/agent/main.py +++ b/src/template/agent/main.py @@ -15,7 +15,7 @@ from ..utils import git from . import nodes from .config import Settings -from .env import Env +from .env import Env, Metadata from .state import State @@ -95,6 +95,7 @@ def main(): run_path.mkdir(exist_ok=True, parents=True) logfire.notice(f"Run path: {run_path}") + old_meta: Metadata | None = None if args.restore: with logfire.span(f"Restoring from {args.restore}"): old_path = Path(args.restore) @@ -102,6 +103,9 @@ def main(): raise Exception(f"Restore path does not exist: {args.restore}") if not old_path.is_dir(): raise Exception(f"Restore path is not a directory: {args.restore}") + old_meta_path = old_path / Path("metadata.json") + with old_meta_path.open() as f: + old_meta = Metadata.model_validate_json(f.read()) # XXX: blindly copying the old run path (containing the history file) # While this is enough to recover graph state, you may have to write some metadata file # to record external resources used like docker image IDs, IPs @@ -112,6 +116,22 @@ def main(): settings=settings, run_path=run_path, ) + + if old_meta: + ancestor_ids: list[str] = old_meta.ancestor_ids + [old_meta.run_id] + # TODO: carry over more information from the previous run + else: + ancestor_ids = [] + new_meta = Metadata( + commit_hash=commit_hash, + args=args.__dict__, + run_id=run_id, + ancestor_ids=ancestor_ids, + ) + new_meta_path = run_path / Path("metadata.json") + with new_meta_path.open("w") as f: + f.write(new_meta.model_dump_json(indent=2)) + asyncio.run(agent(deps))