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<!doctype html>
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<p class="caption" role="heading"><span class="caption-text">Usage</span></p>
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<li class="toctree-l1"><a class="reference internal" href="featurecomparison.html">Feature comparison</a></li>
<li class="toctree-l1"><a class="reference internal" href="workflow.html">Workflow</a></li>
<li class="toctree-l1 has-children"><a class="reference internal" href="setup/index.html">Setup</a><input aria-label="Toggle navigation of Setup" class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" role="switch" type="checkbox"/><label for="toctree-checkbox-1"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l2"><a class="reference internal" href="setup/install.html">Installation</a></li>
<li class="toctree-l2"><a class="reference internal" href="setup/setup-ndi.html">NDI tracking setup</a></li>
<li class="toctree-l2"><a class="reference internal" href="setup/setup-optitrack.html">OptiTrack tracking setup</a></li>
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<li class="toctree-l2"><a class="reference internal" href="core/SessionManagement.html">Session management</a></li>
<li class="toctree-l2"><a class="reference internal" href="core/ToolConfiguration.html">Tool configuration</a></li>
<li class="toctree-l2"><a class="reference internal" href="core/MRI.html">MRI</a></li>
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<li class="toctree-l1 current current-page"><a class="current reference internal" href="#">Citing NaviNIBS</a></li>
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<li class="toctree-l1 has-children"><a class="reference internal" href="source/modules.html">Code</a><input aria-label="Toggle navigation of Code" class="toctree-checkbox" id="toctree-checkbox-4" name="toctree-checkbox-4" role="switch" type="checkbox"/><label for="toctree-checkbox-4"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
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<li class="toctree-l3 has-children"><a class="reference internal" href="source/NaviNIBS.Devices.html">NaviNIBS.Devices package</a><input aria-label="Toggle navigation of NaviNIBS.Devices package" class="toctree-checkbox" id="toctree-checkbox-6" name="toctree-checkbox-6" role="switch" type="checkbox"/><label for="toctree-checkbox-6"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.Devices.IGTLinkToolPositionsServer.html">NaviNIBS.Devices.IGTLinkToolPositionsServer module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.Devices.ToolPositionsClient.html">NaviNIBS.Devices.ToolPositionsClient module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.Devices.ToolPositionsServer.html">NaviNIBS.Devices.ToolPositionsServer module</a></li>
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<li class="toctree-l3 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.html">NaviNIBS.Navigator package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator package" class="toctree-checkbox" id="toctree-checkbox-7" name="toctree-checkbox-7" role="switch" type="checkbox"/><label for="toctree-checkbox-7"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l4 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.html">NaviNIBS.Navigator.GUI package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI package" class="toctree-checkbox" id="toctree-checkbox-8" name="toctree-checkbox-8" role="switch" type="checkbox"/><label for="toctree-checkbox-8"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l5 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.html">NaviNIBS.Navigator.GUI.CollectionModels package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.CollectionModels package" class="toctree-checkbox" id="toctree-checkbox-9" name="toctree-checkbox-9" role="switch" type="checkbox"/><label for="toctree-checkbox-9"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.DigitizedLocationsTableModel.html">NaviNIBS.Navigator.GUI.CollectionModels.DigitizedLocationsTableModel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.FiducialsTableModels.html">NaviNIBS.Navigator.GUI.CollectionModels.FiducialsTableModels module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.HeadPointsTableModel.html">NaviNIBS.Navigator.GUI.CollectionModels.HeadPointsTableModel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.HotkeysTableModel.html">NaviNIBS.Navigator.GUI.CollectionModels.HotkeysTableModel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.SamplesTableModel.html">NaviNIBS.Navigator.GUI.CollectionModels.SamplesTableModel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.TargetsTableModel.html">NaviNIBS.Navigator.GUI.CollectionModels.TargetsTableModel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.ToolsTableModel.html">NaviNIBS.Navigator.GUI.CollectionModels.ToolsTableModel module</a></li>
</ul>
</li>
<li class="toctree-l5 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.EditWindows.html">NaviNIBS.Navigator.GUI.EditWindows package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.EditWindows package" class="toctree-checkbox" id="toctree-checkbox-10" name="toctree-checkbox-10" role="switch" type="checkbox"/><label for="toctree-checkbox-10"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.EditWindows.CoilCalibrationWindow.html">NaviNIBS.Navigator.GUI.EditWindows.CoilCalibrationWindow module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.EditWindows.ImportSessionWindow.html">NaviNIBS.Navigator.GUI.EditWindows.ImportSessionWindow module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.EditWindows.PointerCalibrationWindow.html">NaviNIBS.Navigator.GUI.EditWindows.PointerCalibrationWindow module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.EditWindows.ToolCalibrationWindow.html">NaviNIBS.Navigator.GUI.EditWindows.ToolCalibrationWindow module</a></li>
</ul>
</li>
<li class="toctree-l5 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.html">NaviNIBS.Navigator.GUI.ViewPanels package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.ViewPanels package" class="toctree-checkbox" id="toctree-checkbox-11" name="toctree-checkbox-11" role="switch" type="checkbox"/><label for="toctree-checkbox-11"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l6 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel package" class="toctree-checkbox" id="toctree-checkbox-12" name="toctree-checkbox-12" role="switch" type="checkbox"/><label for="toctree-checkbox-12"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l7 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers package" class="toctree-checkbox" id="toctree-checkbox-13" name="toctree-checkbox-13" role="switch" type="checkbox"/><label for="toctree-checkbox-13"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.MeshSurfaceLayer.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.MeshSurfaceLayer module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.OrientationsLayers.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.OrientationsLayers module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.PlotLayersGroup.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.PlotLayersGroup module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.SampleMetadataOrientationsLayer.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.SampleMetadataOrientationsLayer module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingAngleErrorLayer.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingAngleErrorLayer module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingCrosshairsLayer.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingCrosshairsLayer module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingErrorLineLayer.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingErrorLineLayer module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingPointLayer.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingPointLayer module</a></li>
</ul>
</li>
<li class="toctree-l7"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.NavigatePanel.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.NavigatePanel module</a></li>
<li class="toctree-l7"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.NavigationView.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.NavigationView module</a></li>
</ul>
</li>
<li class="toctree-l6 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel package" class="toctree-checkbox" id="toctree-checkbox-14" name="toctree-checkbox-14" role="switch" type="checkbox"/><label for="toctree-checkbox-14"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l7"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.HotkeyTriggerSourceSettingsWidget.html">NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.HotkeyTriggerSourceSettingsWidget module</a></li>
<li class="toctree-l7"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.LSLTriggerSourceSettingsWidget.html">NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.LSLTriggerSourceSettingsWidget module</a></li>
<li class="toctree-l7"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.TriggerSourceSettingsWidget.html">NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.TriggerSourceSettingsWidget module</a></li>
</ul>
</li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.CameraPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.CameraPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.CoordinateSystemsPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.CoordinateSystemsPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.DigitizeLocationsPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.DigitizeLocationsPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.FiducialsPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.FiducialsPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.HeadModelPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.HeadModelPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.MRIPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.MRIPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.MainViewPanelWithDockWidgets.html">NaviNIBS.Navigator.GUI.ViewPanels.MainViewPanelWithDockWidgets module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.ManageSessionPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.ManageSessionPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.SubjectRegistrationPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.SubjectRegistrationPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.TargetsPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.TargetsPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.ToolsPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.ToolsPanel module</a></li>
</ul>
</li>
<li class="toctree-l5 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.html">NaviNIBS.Navigator.GUI.Widgets package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.Widgets package" class="toctree-checkbox" id="toctree-checkbox-15" name="toctree-checkbox-15" role="switch" type="checkbox"/><label for="toctree-checkbox-15"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.CollectionTableWidget.html">NaviNIBS.Navigator.GUI.Widgets.CollectionTableWidget module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.EditGridWidget.html">NaviNIBS.Navigator.GUI.Widgets.EditGridWidget module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.EditTargetWidget.html">NaviNIBS.Navigator.GUI.Widgets.EditTargetWidget module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.MRIViews.html">NaviNIBS.Navigator.GUI.Widgets.MRIViews module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.SurfViews.html">NaviNIBS.Navigator.GUI.Widgets.SurfViews module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.TrackingStatusWidget.html">NaviNIBS.Navigator.GUI.Widgets.TrackingStatusWidget module</a></li>
</ul>
</li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.NavigatorGUI.html">NaviNIBS.Navigator.GUI.NavigatorGUI module</a></li>
</ul>
</li>
<li class="toctree-l4 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.html">NaviNIBS.Navigator.Model package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.Model package" class="toctree-checkbox" id="toctree-checkbox-16" name="toctree-checkbox-16" role="switch" type="checkbox"/><label for="toctree-checkbox-16"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Addons.html">NaviNIBS.Navigator.Model.Addons module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Calculations.html">NaviNIBS.Navigator.Model.Calculations module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.CoordinateSystems.html">NaviNIBS.Navigator.Model.CoordinateSystems module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.DigitizedLocations.html">NaviNIBS.Navigator.Model.DigitizedLocations module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.DockWidgetLayouts.html">NaviNIBS.Navigator.Model.DockWidgetLayouts module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.GenericCollection.html">NaviNIBS.Navigator.Model.GenericCollection module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.HeadModel.html">NaviNIBS.Navigator.Model.HeadModel module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.MRI.html">NaviNIBS.Navigator.Model.MRI module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.MiscSettings.html">NaviNIBS.Navigator.Model.MiscSettings module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Samples.html">NaviNIBS.Navigator.Model.Samples module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Session.html">NaviNIBS.Navigator.Model.Session module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.SubjectRegistration.html">NaviNIBS.Navigator.Model.SubjectRegistration module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Targets.html">NaviNIBS.Navigator.Model.Targets module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Tools.html">NaviNIBS.Navigator.Model.Tools module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Triggering.html">NaviNIBS.Navigator.Model.Triggering module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.Navigator.TargetingCoordinator.html">NaviNIBS.Navigator.TargetingCoordinator module</a></li>
</ul>
</li>
<li class="toctree-l3 has-children"><a class="reference internal" href="source/NaviNIBS.util.html">NaviNIBS.util package</a><input aria-label="Toggle navigation of NaviNIBS.util package" class="toctree-checkbox" id="toctree-checkbox-17" name="toctree-checkbox-17" role="switch" type="checkbox"/><label for="toctree-checkbox-17"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l4 has-children"><a class="reference internal" href="source/NaviNIBS.util.GUI.html">NaviNIBS.util.GUI package</a><input aria-label="Toggle navigation of NaviNIBS.util.GUI package" class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.Dock.html">NaviNIBS.util.GUI.Dock module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.ErrorDialog.html">NaviNIBS.util.GUI.ErrorDialog module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.IconWidget.html">NaviNIBS.util.GUI.IconWidget module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.Icons.html">NaviNIBS.util.GUI.Icons module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QAppWithAsyncioLoop.html">NaviNIBS.util.GUI.QAppWithAsyncioLoop module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QCollapsibleSection.html">NaviNIBS.util.GUI.QCollapsibleSection module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QDial.html">NaviNIBS.util.GUI.QDial module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QFileSelectWidget.html">NaviNIBS.util.GUI.QFileSelectWidget module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QFlowLayout.html">NaviNIBS.util.GUI.QFlowLayout module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QLineEdit.html">NaviNIBS.util.GUI.QLineEdit module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QMouseWheelAdjustmentGuard.html">NaviNIBS.util.GUI.QMouseWheelAdjustmentGuard module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QScrollContainer.html">NaviNIBS.util.GUI.QScrollContainer module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QTableWidgetDragRows.html">NaviNIBS.util.GUI.QTableWidgetDragRows module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QValidators.html">NaviNIBS.util.GUI.QValidators module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QWidgetWithCloseSignal.html">NaviNIBS.util.GUI.QWidgetWithCloseSignal module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QueuedRedrawMixin.html">NaviNIBS.util.GUI.QueuedRedrawMixin module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.SpatialTransformWidget.html">NaviNIBS.util.GUI.SpatialTransformWidget module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.StyleSheets.html">NaviNIBS.util.GUI.StyleSheets module</a></li>
</ul>
</li>
<li class="toctree-l4 has-children"><a class="reference internal" href="source/NaviNIBS.util.lsl.html">NaviNIBS.util.lsl package</a><input aria-label="Toggle navigation of NaviNIBS.util.lsl package" class="toctree-checkbox" id="toctree-checkbox-19" name="toctree-checkbox-19" role="switch" type="checkbox"/><label for="toctree-checkbox-19"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.lsl.LSLStreamResolver.html">NaviNIBS.util.lsl.LSLStreamResolver module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.lsl.LSLStreamSelector.html">NaviNIBS.util.lsl.LSLStreamSelector module</a></li>
</ul>
</li>
<li class="toctree-l4 has-children"><a class="reference internal" href="source/NaviNIBS.util.pyvista.html">NaviNIBS.util.pyvista package</a><input aria-label="Toggle navigation of NaviNIBS.util.pyvista package" class="toctree-checkbox" id="toctree-checkbox-20" name="toctree-checkbox-20" role="switch" type="checkbox"/><label for="toctree-checkbox-20"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l5 has-children"><a class="reference internal" href="source/NaviNIBS.util.pyvista.RemotePlotting.html">NaviNIBS.util.pyvista.RemotePlotting package</a><input aria-label="Toggle navigation of NaviNIBS.util.pyvista.RemotePlotting package" class="toctree-checkbox" id="toctree-checkbox-21" name="toctree-checkbox-21" role="switch" type="checkbox"/><label for="toctree-checkbox-21"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.util.pyvista.RemotePlotting.RemoteLayeredPlotter.html">NaviNIBS.util.pyvista.RemotePlotting.RemoteLayeredPlotter module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.util.pyvista.RemotePlotting.RemoteLayeredPlotterProxies.html">NaviNIBS.util.pyvista.RemotePlotting.RemoteLayeredPlotterProxies module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.util.pyvista.RemotePlotting.RemotePlotter.html">NaviNIBS.util.pyvista.RemotePlotting.RemotePlotter module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.util.pyvista.RemotePlotting.RemotePlotterProxy.html">NaviNIBS.util.pyvista.RemotePlotting.RemotePlotterProxy module</a></li>
</ul>
</li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.pyvista.PlotInteraction.html">NaviNIBS.util.pyvista.PlotInteraction module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.pyvista.dataset.html">NaviNIBS.util.pyvista.dataset module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.pyvista.plotting.html">NaviNIBS.util.pyvista.plotting module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.pyvista.ticks.html">NaviNIBS.util.pyvista.ticks module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.AsyncRunner.html">NaviNIBS.util.AsyncRunner module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.Asyncio.html">NaviNIBS.util.Asyncio module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.CoilOrientations.html">NaviNIBS.util.CoilOrientations module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.Transforms.html">NaviNIBS.util.Transforms module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.ZMQAsyncioFix.html">NaviNIBS.util.ZMQAsyncioFix module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.ZMQConnector.html">NaviNIBS.util.ZMQConnector module</a></li>
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<li class="toctree-l1"><a class="reference external" href="https://precisionneuro.stanford.edu">Precision Neurotherapeutics Lab</a></li>
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<section id="citing-navinibs">
<h1>Citing NaviNIBS<a class="headerlink" href="#citing-navinibs" title="Link to this heading">¶</a></h1>
<p>If you use NaviNIBS in your research, please cite the following preprint:</p>
<div class="admonition-primary-navinibs-paper admonition">
<p class="admonition-title">Primary NaviNIBS paper</p>
<p>Christopher C. Cline, Lily Forman, Winn Hartford, Jade Truong, Sara Parmigiani, and Corey J. Keller, “NaviNIBS: a comprehensive and open-source software toolbox for neuronavigated noninvasive brain stimulation,” 2025 J. Neural Eng. 22 056007. doi: <a class="reference external" href="https://doi.org/10.1088/1741-2552/adfab2">10.1088/1741-2552/adfab2</a></p>
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<p>Parts of NaviNIBS also make use of various open-source software packages. Please make sure to also cite the relevant software packages when using NaviNIBS. These include:</p>
<ul class="simple">
<li><p>Andras Lasso, Tamas Heffter, Adam Rankin, Csaba Pinter, Tamas Ungi, and Gabor Fichtinger, “PLUS: Open-Source Toolkit for Ultrasound-Guided Intervention Systems,” <em>IEEE Trans. Biomed. Eng.</em>, vol. 61, no. 10, pp. 2527-2537, Oct. 2014, doi: 10.1109/TBME.2014.2322864</p></li>
<li><p>A. Thielscher, A. Antunes, and G. B. Saturnino, “Field modeling for transcranial magnetic stimulation: A useful tool to understand the physiological effects of TMS?,” in <em>2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)</em>, Aug. 2015, pp. 222-225. doi: 10.1109/EMBC.2015.7318340</p></li>
<li><p>Jesper D. Nielsen et al., “Automatic skull segmentation from MR images for realistic volume conductor models of the head: Assessment of the state-of-the-art,” <em>NeuroImage</em>, vol. 174, pp. 587-598, Jul. 2018, doi: 10.1016/j.neuroimage.2018.03.001</p></li>
<li><p>Oula Puonti, Koen Van Leemput, Guilherme B. Saturnino, Hartwig R. Siebner, Kristoffer H. Madsen, and Axel Thielscher, “Accurate and robust whole-head segmentation from magnetic resonance images for individualized head modeling,” <em>NeuroImage</em>, vol. 219, p. 117044, Oct. 2020, doi: 10.1016/j.neuroimage.2020.117044</p></li>
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