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<!doctype html>
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<p class="caption" role="heading"><span class="caption-text">Usage</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="featurecomparison.html">Feature comparison</a></li>
<li class="toctree-l1"><a class="reference internal" href="workflow.html">Workflow</a></li>
<li class="toctree-l1 has-children"><a class="reference internal" href="setup/index.html">Setup</a><input aria-label="Toggle navigation of Setup" class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" role="switch" type="checkbox"/><label for="toctree-checkbox-1"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l2"><a class="reference internal" href="setup/install.html">Installation</a></li>
<li class="toctree-l2"><a class="reference internal" href="setup/setup-ndi.html">NDI tracking setup</a></li>
<li class="toctree-l2"><a class="reference internal" href="setup/setup-optitrack.html">OptiTrack tracking setup</a></li>
<li class="toctree-l2"><a class="reference internal" href="setup/development.html">Development</a></li>
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<li class="toctree-l1 has-children"><a class="reference internal" href="core/index.html">Core features</a><input aria-label="Toggle navigation of Core features" class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" role="switch" type="checkbox"/><label for="toctree-checkbox-2"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l2"><a class="reference internal" href="core/SessionManagement.html">Session management</a></li>
<li class="toctree-l2"><a class="reference internal" href="core/ToolConfiguration.html">Tool configuration</a></li>
<li class="toctree-l2"><a class="reference internal" href="core/MRI.html">MRI</a></li>
<li class="toctree-l2"><a class="reference internal" href="core/HeadModel.html">Head model</a></li>
<li class="toctree-l2"><a class="reference internal" href="core/TargetPlanning.html">Target planning</a></li>
<li class="toctree-l2"><a class="reference internal" href="core/SubjectRegistration.html">Subject registration</a></li>
<li class="toctree-l2"><a class="reference internal" href="core/CoilCalibration.html">Coil calibration</a></li>
<li class="toctree-l2"><a class="reference internal" href="core/BasicNavigation.html">Basic navigation</a></li>
<li class="toctree-l2"><a class="reference internal" href="core/TriggeringConfiguration.html">Triggering configuration</a></li>
<li class="toctree-l2"><a class="reference internal" href="core/ElectrodeDigitization.html">Electrode digitization</a></li>
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<li class="toctree-l2"><a class="reference internal" href="addons/cobot.html">Cobot control</a></li>
<li class="toctree-l2"><a class="reference internal" href="addons/lsl-output.html">LSL Output</a></li>
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<li class="toctree-l1"><a class="reference internal" href="datamodel.html">Data model</a></li>
<li class="toctree-l1"><a class="reference internal" href="troubleshooting/index.html">Troubleshooting</a></li>
<li class="toctree-l1"><a class="reference internal" href="citing.html">Citing NaviNIBS</a></li>
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<li class="toctree-l1 has-children"><a class="reference internal" href="source/modules.html">Code</a><input aria-label="Toggle navigation of Code" class="toctree-checkbox" id="toctree-checkbox-4" name="toctree-checkbox-4" role="switch" type="checkbox"/><label for="toctree-checkbox-4"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
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<li class="toctree-l3 has-children"><a class="reference internal" href="source/NaviNIBS.Devices.html">NaviNIBS.Devices package</a><input aria-label="Toggle navigation of NaviNIBS.Devices package" class="toctree-checkbox" id="toctree-checkbox-6" name="toctree-checkbox-6" role="switch" type="checkbox"/><label for="toctree-checkbox-6"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.Devices.IGTLinkToolPositionsServer.html">NaviNIBS.Devices.IGTLinkToolPositionsServer module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.Devices.ToolPositionsClient.html">NaviNIBS.Devices.ToolPositionsClient module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.Devices.ToolPositionsServer.html">NaviNIBS.Devices.ToolPositionsServer module</a></li>
</ul>
</li>
<li class="toctree-l3 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.html">NaviNIBS.Navigator package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator package" class="toctree-checkbox" id="toctree-checkbox-7" name="toctree-checkbox-7" role="switch" type="checkbox"/><label for="toctree-checkbox-7"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l4 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.html">NaviNIBS.Navigator.GUI package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI package" class="toctree-checkbox" id="toctree-checkbox-8" name="toctree-checkbox-8" role="switch" type="checkbox"/><label for="toctree-checkbox-8"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l5 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.html">NaviNIBS.Navigator.GUI.CollectionModels package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.CollectionModels package" class="toctree-checkbox" id="toctree-checkbox-9" name="toctree-checkbox-9" role="switch" type="checkbox"/><label for="toctree-checkbox-9"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.DigitizedLocationsTableModel.html">NaviNIBS.Navigator.GUI.CollectionModels.DigitizedLocationsTableModel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.FiducialsTableModels.html">NaviNIBS.Navigator.GUI.CollectionModels.FiducialsTableModels module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.HeadPointsTableModel.html">NaviNIBS.Navigator.GUI.CollectionModels.HeadPointsTableModel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.HotkeysTableModel.html">NaviNIBS.Navigator.GUI.CollectionModels.HotkeysTableModel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.SamplesTableModel.html">NaviNIBS.Navigator.GUI.CollectionModels.SamplesTableModel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.TargetsTableModel.html">NaviNIBS.Navigator.GUI.CollectionModels.TargetsTableModel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.CollectionModels.ToolsTableModel.html">NaviNIBS.Navigator.GUI.CollectionModels.ToolsTableModel module</a></li>
</ul>
</li>
<li class="toctree-l5 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.EditWindows.html">NaviNIBS.Navigator.GUI.EditWindows package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.EditWindows package" class="toctree-checkbox" id="toctree-checkbox-10" name="toctree-checkbox-10" role="switch" type="checkbox"/><label for="toctree-checkbox-10"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.EditWindows.CoilCalibrationWindow.html">NaviNIBS.Navigator.GUI.EditWindows.CoilCalibrationWindow module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.EditWindows.ImportSessionWindow.html">NaviNIBS.Navigator.GUI.EditWindows.ImportSessionWindow module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.EditWindows.PointerCalibrationWindow.html">NaviNIBS.Navigator.GUI.EditWindows.PointerCalibrationWindow module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.EditWindows.ToolCalibrationWindow.html">NaviNIBS.Navigator.GUI.EditWindows.ToolCalibrationWindow module</a></li>
</ul>
</li>
<li class="toctree-l5 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.html">NaviNIBS.Navigator.GUI.ViewPanels package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.ViewPanels package" class="toctree-checkbox" id="toctree-checkbox-11" name="toctree-checkbox-11" role="switch" type="checkbox"/><label for="toctree-checkbox-11"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l6 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel package" class="toctree-checkbox" id="toctree-checkbox-12" name="toctree-checkbox-12" role="switch" type="checkbox"/><label for="toctree-checkbox-12"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l7 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers package" class="toctree-checkbox" id="toctree-checkbox-13" name="toctree-checkbox-13" role="switch" type="checkbox"/><label for="toctree-checkbox-13"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.MeshSurfaceLayer.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.MeshSurfaceLayer module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.OrientationsLayers.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.OrientationsLayers module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.PlotLayersGroup.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.PlotLayersGroup module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.SampleMetadataOrientationsLayer.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.SampleMetadataOrientationsLayer module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingAngleErrorLayer.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingAngleErrorLayer module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingCrosshairsLayer.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingCrosshairsLayer module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingErrorLineLayer.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingErrorLineLayer module</a></li>
<li class="toctree-l8"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingPointLayer.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.ViewLayers.TargetingPointLayer module</a></li>
</ul>
</li>
<li class="toctree-l7"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.NavigatePanel.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.NavigatePanel module</a></li>
<li class="toctree-l7"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.NavigationView.html">NaviNIBS.Navigator.GUI.ViewPanels.NavigatePanel.NavigationView module</a></li>
</ul>
</li>
<li class="toctree-l6 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel package" class="toctree-checkbox" id="toctree-checkbox-14" name="toctree-checkbox-14" role="switch" type="checkbox"/><label for="toctree-checkbox-14"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l7"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.HotkeyTriggerSourceSettingsWidget.html">NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.HotkeyTriggerSourceSettingsWidget module</a></li>
<li class="toctree-l7"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.LSLTriggerSourceSettingsWidget.html">NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.LSLTriggerSourceSettingsWidget module</a></li>
<li class="toctree-l7"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.TriggerSourceSettingsWidget.html">NaviNIBS.Navigator.GUI.ViewPanels.TriggerSettingsPanel.TriggerSourceSettingsWidget module</a></li>
</ul>
</li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.CameraPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.CameraPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.CoordinateSystemsPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.CoordinateSystemsPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.DigitizeLocationsPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.DigitizeLocationsPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.FiducialsPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.FiducialsPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.HeadModelPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.HeadModelPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.MRIPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.MRIPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.MainViewPanelWithDockWidgets.html">NaviNIBS.Navigator.GUI.ViewPanels.MainViewPanelWithDockWidgets module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.ManageSessionPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.ManageSessionPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.SubjectRegistrationPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.SubjectRegistrationPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.TargetsPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.TargetsPanel module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.ViewPanels.ToolsPanel.html">NaviNIBS.Navigator.GUI.ViewPanels.ToolsPanel module</a></li>
</ul>
</li>
<li class="toctree-l5 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.html">NaviNIBS.Navigator.GUI.Widgets package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.GUI.Widgets package" class="toctree-checkbox" id="toctree-checkbox-15" name="toctree-checkbox-15" role="switch" type="checkbox"/><label for="toctree-checkbox-15"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.CollectionTableWidget.html">NaviNIBS.Navigator.GUI.Widgets.CollectionTableWidget module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.EditGridWidget.html">NaviNIBS.Navigator.GUI.Widgets.EditGridWidget module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.EditTargetWidget.html">NaviNIBS.Navigator.GUI.Widgets.EditTargetWidget module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.MRIViews.html">NaviNIBS.Navigator.GUI.Widgets.MRIViews module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.SurfViews.html">NaviNIBS.Navigator.GUI.Widgets.SurfViews module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.Widgets.TrackingStatusWidget.html">NaviNIBS.Navigator.GUI.Widgets.TrackingStatusWidget module</a></li>
</ul>
</li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.GUI.NavigatorGUI.html">NaviNIBS.Navigator.GUI.NavigatorGUI module</a></li>
</ul>
</li>
<li class="toctree-l4 has-children"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.html">NaviNIBS.Navigator.Model package</a><input aria-label="Toggle navigation of NaviNIBS.Navigator.Model package" class="toctree-checkbox" id="toctree-checkbox-16" name="toctree-checkbox-16" role="switch" type="checkbox"/><label for="toctree-checkbox-16"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Addons.html">NaviNIBS.Navigator.Model.Addons module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Calculations.html">NaviNIBS.Navigator.Model.Calculations module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.CoordinateSystems.html">NaviNIBS.Navigator.Model.CoordinateSystems module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.DigitizedLocations.html">NaviNIBS.Navigator.Model.DigitizedLocations module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.DockWidgetLayouts.html">NaviNIBS.Navigator.Model.DockWidgetLayouts module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.GenericCollection.html">NaviNIBS.Navigator.Model.GenericCollection module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.HeadModel.html">NaviNIBS.Navigator.Model.HeadModel module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.MRI.html">NaviNIBS.Navigator.Model.MRI module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.MiscSettings.html">NaviNIBS.Navigator.Model.MiscSettings module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Samples.html">NaviNIBS.Navigator.Model.Samples module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Session.html">NaviNIBS.Navigator.Model.Session module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.SubjectRegistration.html">NaviNIBS.Navigator.Model.SubjectRegistration module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Targets.html">NaviNIBS.Navigator.Model.Targets module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Tools.html">NaviNIBS.Navigator.Model.Tools module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.Navigator.Model.Triggering.html">NaviNIBS.Navigator.Model.Triggering module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.Navigator.TargetingCoordinator.html">NaviNIBS.Navigator.TargetingCoordinator module</a></li>
</ul>
</li>
<li class="toctree-l3 has-children"><a class="reference internal" href="source/NaviNIBS.util.html">NaviNIBS.util package</a><input aria-label="Toggle navigation of NaviNIBS.util package" class="toctree-checkbox" id="toctree-checkbox-17" name="toctree-checkbox-17" role="switch" type="checkbox"/><label for="toctree-checkbox-17"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l4 has-children"><a class="reference internal" href="source/NaviNIBS.util.GUI.html">NaviNIBS.util.GUI package</a><input aria-label="Toggle navigation of NaviNIBS.util.GUI package" class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.Dock.html">NaviNIBS.util.GUI.Dock module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.ErrorDialog.html">NaviNIBS.util.GUI.ErrorDialog module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.IconWidget.html">NaviNIBS.util.GUI.IconWidget module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.Icons.html">NaviNIBS.util.GUI.Icons module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QAppWithAsyncioLoop.html">NaviNIBS.util.GUI.QAppWithAsyncioLoop module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QCollapsibleSection.html">NaviNIBS.util.GUI.QCollapsibleSection module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QDial.html">NaviNIBS.util.GUI.QDial module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QFileSelectWidget.html">NaviNIBS.util.GUI.QFileSelectWidget module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QFlowLayout.html">NaviNIBS.util.GUI.QFlowLayout module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QLineEdit.html">NaviNIBS.util.GUI.QLineEdit module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QMouseWheelAdjustmentGuard.html">NaviNIBS.util.GUI.QMouseWheelAdjustmentGuard module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QScrollContainer.html">NaviNIBS.util.GUI.QScrollContainer module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QTableWidgetDragRows.html">NaviNIBS.util.GUI.QTableWidgetDragRows module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QValidators.html">NaviNIBS.util.GUI.QValidators module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QWidgetWithCloseSignal.html">NaviNIBS.util.GUI.QWidgetWithCloseSignal module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.QueuedRedrawMixin.html">NaviNIBS.util.GUI.QueuedRedrawMixin module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.SpatialTransformWidget.html">NaviNIBS.util.GUI.SpatialTransformWidget module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.GUI.StyleSheets.html">NaviNIBS.util.GUI.StyleSheets module</a></li>
</ul>
</li>
<li class="toctree-l4 has-children"><a class="reference internal" href="source/NaviNIBS.util.lsl.html">NaviNIBS.util.lsl package</a><input aria-label="Toggle navigation of NaviNIBS.util.lsl package" class="toctree-checkbox" id="toctree-checkbox-19" name="toctree-checkbox-19" role="switch" type="checkbox"/><label for="toctree-checkbox-19"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.lsl.LSLStreamResolver.html">NaviNIBS.util.lsl.LSLStreamResolver module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.lsl.LSLStreamSelector.html">NaviNIBS.util.lsl.LSLStreamSelector module</a></li>
</ul>
</li>
<li class="toctree-l4 has-children"><a class="reference internal" href="source/NaviNIBS.util.pyvista.html">NaviNIBS.util.pyvista package</a><input aria-label="Toggle navigation of NaviNIBS.util.pyvista package" class="toctree-checkbox" id="toctree-checkbox-20" name="toctree-checkbox-20" role="switch" type="checkbox"/><label for="toctree-checkbox-20"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l5 has-children"><a class="reference internal" href="source/NaviNIBS.util.pyvista.RemotePlotting.html">NaviNIBS.util.pyvista.RemotePlotting package</a><input aria-label="Toggle navigation of NaviNIBS.util.pyvista.RemotePlotting package" class="toctree-checkbox" id="toctree-checkbox-21" name="toctree-checkbox-21" role="switch" type="checkbox"/><label for="toctree-checkbox-21"><span class="icon"><svg><use href="#svg-arrow-right"></use></svg></span></label><ul>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.util.pyvista.RemotePlotting.RemoteLayeredPlotter.html">NaviNIBS.util.pyvista.RemotePlotting.RemoteLayeredPlotter module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.util.pyvista.RemotePlotting.RemoteLayeredPlotterProxies.html">NaviNIBS.util.pyvista.RemotePlotting.RemoteLayeredPlotterProxies module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.util.pyvista.RemotePlotting.RemotePlotter.html">NaviNIBS.util.pyvista.RemotePlotting.RemotePlotter module</a></li>
<li class="toctree-l6"><a class="reference internal" href="source/NaviNIBS.util.pyvista.RemotePlotting.RemotePlotterProxy.html">NaviNIBS.util.pyvista.RemotePlotting.RemotePlotterProxy module</a></li>
</ul>
</li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.pyvista.PlotInteraction.html">NaviNIBS.util.pyvista.PlotInteraction module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.pyvista.dataset.html">NaviNIBS.util.pyvista.dataset module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.pyvista.plotting.html">NaviNIBS.util.pyvista.plotting module</a></li>
<li class="toctree-l5"><a class="reference internal" href="source/NaviNIBS.util.pyvista.ticks.html">NaviNIBS.util.pyvista.ticks module</a></li>
</ul>
</li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.AsyncRunner.html">NaviNIBS.util.AsyncRunner module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.Asyncio.html">NaviNIBS.util.Asyncio module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.CoilOrientations.html">NaviNIBS.util.CoilOrientations module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.Transforms.html">NaviNIBS.util.Transforms module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.ZMQAsyncioFix.html">NaviNIBS.util.ZMQAsyncioFix module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.ZMQConnector.html">NaviNIBS.util.ZMQConnector module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.attrs.html">NaviNIBS.util.attrs module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.json.html">NaviNIBS.util.json module</a></li>
<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.logging.html">NaviNIBS.util.logging module</a></li>
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<li class="toctree-l4"><a class="reference internal" href="source/NaviNIBS.util.test_attrs.html">NaviNIBS.util.test_attrs module</a></li>
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<p class="caption" role="heading"><span class="caption-text">Links</span></p>
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<li class="toctree-l1"><a class="reference external" href="https://github.com/PrecisionNeuroLab/NaviNIBS">Github</a></li>
<li class="toctree-l1"><a class="reference external" href="https://precisionneuro.stanford.edu">Precision Neurotherapeutics Lab</a></li>
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<section id="navinibs">
<h1>NaviNIBS<a class="headerlink" href="#navinibs" title="Link to this heading">¶</a></h1>
<p>NaviNIBS is a comprehensive toolbox for neuronavigated noninvasive brain stimulation. In its current form, NaviNIBS focuses on neuronavigation techniques for transcranial magnetic stimulation (TMS), allowing for precise and accurate positioning of the TMS coil over a subject’s head. The software includes key features such as MRI data visualization, target planning, subject head tracking, subject registration, coil tracking, and electrode digitization. Additionally, NaviNIBS supports addons for extending functionality, with addons already implemented for robotic coil positioning, data streaming, and integration of real-time electrophysiology data during neuronavigation.</p>
<p>NaviNIBS is implemented with Python, making use of various open-source libraries for data processing, visualization, and hardware integration.</p>
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<p class="admonition-title">Warning</p>
<p>NaviNIBS is currently in beta testing and under active development. You will likely encounter bugs and limitations. The software is provided “as is” without warranty of any kind. Make sure you are using this neuronavigation software in a safe and responsible manner.</p>
<p>Feel free to report any issues you encounter on the <a class="reference external" href="https://github.com/PrecisionNeuroLab/NaviNIBS/issues">GitHub issue tracker</a>.</p>
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<p>For a summary of the capabilities of NaviNIBS, see <a class="reference internal" href="featurecomparison.html"><span class="doc">Feature comparison</span></a>.</p>
<p>To get started with NaviNIBS, see <a class="reference internal" href="workflow.html"><span class="doc">Workflow</span></a>.</p>
<img alt="NaviNIBS navigation with Cobot addon" src="_images/CobotNav_Contact.png" />
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