From f77fa3752bd24b1f87ac488f063044c1ae4e7962 Mon Sep 17 00:00:00 2001
From: Andrea Talenti <23279528+RenzoTale88@users.noreply.github.com>
Date: Wed, 6 May 2026 08:45:46 +0100
Subject: [PATCH 1/6] Update some packages

---
 Cargo.lock | 679 ++++++++++++++++++++++++++++++++++++++---------------
 Cargo.toml |   2 +-
 2 files changed, 491 insertions(+), 190 deletions(-)

diff --git a/Cargo.lock b/Cargo.lock
index 567c14c..b727644 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -34,9 +34,9 @@ dependencies = [
 
 [[package]]
 name = "anstream"
-version = "0.6.21"
+version = "1.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "43d5b281e737544384e969a5ccad3f1cdd24b48086a0fc1b2a5262a26b8f4f4a"
+checksum = "824a212faf96e9acacdbd09febd34438f8f711fb84e09a8916013cd7815ca28d"
 dependencies = [
  "anstyle",
  "anstyle-parse",
@@ -49,15 +49,15 @@ dependencies = [
 
 [[package]]
 name = "anstyle"
-version = "1.0.13"
+version = "1.0.14"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5192cca8006f1fd4f7237516f40fa183bb07f8fbdfedaa0036de5ea9b0b45e78"
+checksum = "940b3a0ca603d1eade50a4846a2afffd5ef57a9feac2c0e2ec2e14f9ead76000"
 
 [[package]]
 name = "anstyle-parse"
-version = "0.2.7"
+version = "1.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4e7644824f0aa2c7b9384579234ef10eb7efb6a0deb83f9630a49594dd9c15c2"
+checksum = "52ce7f38b242319f7cabaa6813055467063ecdc9d355bbb4ce0c68908cd8130e"
 dependencies = [
  "utf8parse",
 ]
@@ -84,9 +84,9 @@ dependencies = [
 
 [[package]]
 name = "anyhow"
-version = "1.0.100"
+version = "1.0.102"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a23eb6b1614318a8071c9b2521f36b424b2c83db5eb3a0fead4a6c0809af6e61"
+checksum = "7f202df86484c868dbad7eaa557ef785d5c66295e41b460ef922eca0723b842c"
 
 [[package]]
 name = "approx"
@@ -128,7 +128,7 @@ version = "0.69.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "271383c67ccabffb7381723dea0672a673f292304fcb45c01cc648c7a8d58088"
 dependencies = [
- "bitflags 2.10.0",
+ "bitflags 2.11.1",
  "cexpr",
  "clang-sys",
  "itertools 0.12.1",
@@ -163,21 +163,21 @@ checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a"
 
 [[package]]
 name = "bitflags"
-version = "2.10.0"
+version = "2.11.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "812e12b5285cc515a9c72a5c1d3b6d46a19dac5acfef5265968c166106e31dd3"
+checksum = "c4512299f36f043ab09a583e57bceb5a5aab7a73db1805848e8fef3c9e8c78b3"
 
 [[package]]
 name = "bumpalo"
-version = "3.19.1"
+version = "3.20.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5dd9dc738b7a8311c7ade152424974d8115f2cdad61e8dab8dac9f2362298510"
+checksum = "5d20789868f4b01b2f2caec9f5c4e0213b41e3e5702a50157d699ae31ced2fcb"
 
 [[package]]
 name = "bytemuck"
-version = "1.24.0"
+version = "1.25.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1fbdf580320f38b612e485521afda1ee26d10cc9884efaaa750d383e13e3c5f4"
+checksum = "c8efb64bd706a16a1bdde310ae86b351e4d21550d98d056f22f8a7f7a2183fec"
 
 [[package]]
 name = "byteorder"
@@ -207,9 +207,9 @@ dependencies = [
 
 [[package]]
 name = "cc"
-version = "1.2.53"
+version = "1.2.61"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "755d2fce177175ffca841e9a06afdb2c4ab0f593d53b4dee48147dfaade85932"
+checksum = "d16d90359e986641506914ba71350897565610e87ce0ad9e6f28569db3dd5c6d"
 dependencies = [
  "find-msvc-tools",
  "jobserver",
@@ -232,11 +232,22 @@ version = "1.0.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "9330f8b2ff13f34540b44e946ef35111825727b38d33286ef986142615121801"
 
+[[package]]
+name = "chacha20"
+version = "0.10.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "6f8d983286843e49675a4b7a2d174efe136dc93a18d69130dd18198a6c167601"
+dependencies = [
+ "cfg-if",
+ "cpufeatures",
+ "rand_core 0.10.1",
+]
+
 [[package]]
 name = "chrono"
-version = "0.4.43"
+version = "0.4.44"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fac4744fb15ae8337dc853fee7fb3f4e48c0fbaa23d0afe49c447b4fab126118"
+checksum = "c673075a2e0e5f4a1dde27ce9dee1ea4558c7ffe648f576438a20ca1d2acc4b0"
 dependencies = [
  "iana-time-zone",
  "js-sys",
@@ -259,18 +270,18 @@ dependencies = [
 
 [[package]]
 name = "clap"
-version = "4.5.54"
+version = "4.6.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c6e6ff9dcd79cff5cd969a17a545d79e84ab086e444102a591e288a8aa3ce394"
+checksum = "1ddb117e43bbf7dacf0a4190fef4d345b9bad68dfc649cb349e7d17d28428e51"
 dependencies = [
  "clap_builder",
 ]
 
 [[package]]
 name = "clap_builder"
-version = "4.5.54"
+version = "4.6.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fa42cf4d2b7a41bc8f663a7cab4031ebafa1bf3875705bfaf8466dc60ab52c00"
+checksum = "714a53001bf66416adb0e2ef5ac857140e7dc3a0c48fb28b2f10762fc4b5069f"
 dependencies = [
  "anstream",
  "anstyle",
@@ -280,9 +291,9 @@ dependencies = [
 
 [[package]]
 name = "clap_lex"
-version = "0.7.7"
+version = "1.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c3e64b0cc0439b12df2fa678eae89a1c56a529fd067a9115f7827f1fffd22b32"
+checksum = "c8d4a3bb8b1e0c1050499d1815f5ab16d04f0959b233085fb31653fbfc9d98f9"
 
 [[package]]
 name = "cloudabi"
@@ -295,18 +306,18 @@ dependencies = [
 
 [[package]]
 name = "cmake"
-version = "0.1.57"
+version = "0.1.58"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "75443c44cd6b379beb8c5b45d85d0773baf31cce901fe7bb252f4eff3008ef7d"
+checksum = "c0f78a02292a74a88ac736019ab962ece0bc380e3f977bf72e376c5d78ff0678"
 dependencies = [
  "cc",
 ]
 
 [[package]]
 name = "colorchoice"
-version = "1.0.4"
+version = "1.0.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b05b61dc5112cbb17e4b6cd61790d9845d13888356391624cbe7e41efeac1e75"
+checksum = "1d07550c9036bf2ae0c684c4297d503f838287c83c53686d05370d0e139ae570"
 
 [[package]]
 name = "core-foundation-sys"
@@ -316,13 +327,22 @@ checksum = "773648b94d0e5d620f64f280777445740e61fe701025087ec8b57f45c791888b"
 
 [[package]]
 name = "counter"
-version = "0.7.0"
+version = "0.7.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "337a5b3c62043f6a4f5331bdb467a7f7a2099dce8522bcded6d4ebda1214fa4c"
+checksum = "66e8e052be91f1c8aae2c1d81307d9f6e67f5f37001e3ddee419e971e73f03bc"
 dependencies = [
  "num-traits",
 ]
 
+[[package]]
+name = "cpufeatures"
+version = "0.3.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "8b2a41393f66f16b0823bb79094d54ac5fbd34ab292ddafb9a0456ac9f87d201"
+dependencies = [
+ "libc",
+]
+
 [[package]]
 name = "crc32fast"
 version = "1.5.0"
@@ -396,9 +416,9 @@ checksum = "460fbee9c2c2f33933d720630a6a0bac33ba7053db5344fac858d4b8952d77d5"
 
 [[package]]
 name = "curl-sys"
-version = "0.4.85+curl-8.18.0"
+version = "0.4.88+curl-8.20.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c0efa6142b5ecc05f6d3eaa39e6af4888b9d3939273fb592c92b7088a8cf3fdb"
+checksum = "644816de6547255eff4e491a1dda1c19b7237f00b62a61e6e64859ce4f2906d0"
 dependencies = [
  "cc",
  "libc",
@@ -406,7 +426,7 @@ dependencies = [
  "openssl-sys",
  "pkg-config",
  "vcpkg",
- "windows-sys 0.59.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -456,9 +476,9 @@ checksum = "48c757948c5ede0e46177b7add2e67155f70e33c07fea8284df6576da70b3719"
 
 [[package]]
 name = "env_filter"
-version = "0.1.4"
+version = "1.0.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1bf3c259d255ca70051b30e2e95b5446cdb8949ac4cd22c0d7fd634d89f568e2"
+checksum = "32e90c2accc4b07a8456ea0debdc2e7587bdd890680d71173a15d4ae604f6eef"
 dependencies = [
  "log",
  "regex",
@@ -466,9 +486,9 @@ dependencies = [
 
 [[package]]
 name = "env_logger"
-version = "0.11.8"
+version = "0.11.10"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "13c863f0904021b108aa8b2f55046443e6b1ebde8fd4a15c399893aae4fa069f"
+checksum = "0621c04f2196ac3f488dd583365b9c09be011a4ab8b9f37248ffcc8f6198b56a"
 dependencies = [
  "anstream",
  "anstyle",
@@ -477,6 +497,12 @@ dependencies = [
  "log",
 ]
 
+[[package]]
+name = "equivalent"
+version = "1.0.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "877a4ace8713b0bcf2a4e7eec82529c029f1d0619886d18145fea96c3ffe5c0f"
+
 [[package]]
 name = "errno"
 version = "0.3.14"
@@ -489,26 +515,32 @@ dependencies = [
 
 [[package]]
 name = "fastrand"
-version = "2.3.0"
+version = "2.4.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "37909eebbb50d72f9059c3b6d82c0463f2ff062c9e95845c43a6c9c0355411be"
+checksum = "9f1f227452a390804cdb637b74a86990f2a7d7ba4b7d5693aac9b4dd6defd8d6"
 
 [[package]]
 name = "find-msvc-tools"
-version = "0.1.8"
+version = "0.1.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8591b0bcc8a98a64310a2fae1bb3e9b8564dd10e381e6e28010fde8e8e8568db"
+checksum = "5baebc0774151f905a1a2cc41989300b1e6fbb29aff0ceffa1064fdd3088d582"
 
 [[package]]
 name = "flate2"
-version = "1.1.8"
+version = "1.1.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b375d6465b98090a5f25b1c7703f3859783755aa9a80433b36e0379a3ec2f369"
+checksum = "843fba2746e448b37e26a819579957415c8cef339bf08564fe8b7ddbd959573c"
 dependencies = [
  "crc32fast",
  "miniz_oxide",
 ]
 
+[[package]]
+name = "foldhash"
+version = "0.1.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d9c4f5dac5e15c24eb999c26181a6ca40b39fe946cbe4c263c7209467bc83af2"
+
 [[package]]
 name = "form_urlencoded"
 version = "1.2.2"
@@ -533,6 +565,30 @@ version = "0.1.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "a06f77d526c1a601b7c4cdd98f54b5eaabffc14d5f2f0296febdc7f357c6d3ba"
 
+[[package]]
+name = "futures-core"
+version = "0.3.32"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "7e3450815272ef58cec6d564423f6e755e25379b217b0bc688e295ba24df6b1d"
+
+[[package]]
+name = "futures-task"
+version = "0.3.32"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "037711b3d59c33004d3856fbdc83b99d4ff37a24768fa1be9ce3538a1cde4393"
+
+[[package]]
+name = "futures-util"
+version = "0.3.32"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "389ca41296e6190b48053de0321d02a77f32f8a5d2461dd38762c0593805c6d6"
+dependencies = [
+ "futures-core",
+ "futures-task",
+ "pin-project-lite",
+ "slab",
+]
+
 [[package]]
 name = "getrandom"
 version = "0.2.17"
@@ -552,10 +608,24 @@ checksum = "899def5c37c4fd7b2664648c28120ecec138e4d395b459e5ca34f9cce2dd77fd"
 dependencies = [
  "cfg-if",
  "libc",
- "r-efi",
+ "r-efi 5.3.0",
  "wasip2",
 ]
 
+[[package]]
+name = "getrandom"
+version = "0.4.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0de51e6874e94e7bf76d726fc5d13ba782deca734ff60d5bb2fb2607c7406555"
+dependencies = [
+ "cfg-if",
+ "libc",
+ "r-efi 6.0.0",
+ "rand_core 0.10.1",
+ "wasip2",
+ "wasip3",
+]
+
 [[package]]
 name = "glob"
 version = "0.3.3"
@@ -581,6 +651,21 @@ version = "0.2.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "be629448e3d85a1be12868f190df524655fea8ec3f143e14d803e298f618acae"
 
+[[package]]
+name = "hashbrown"
+version = "0.15.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "9229cfe53dfd69f0609a49f65461bd93001ea1ef889cd5529dd176593f5338a1"
+dependencies = [
+ "foldhash",
+]
+
+[[package]]
+name = "hashbrown"
+version = "0.17.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "4f467dd6dccf739c208452f8014c75c18bb8301b050ad1cfb27153803edb0f51"
+
 [[package]]
 name = "heck"
 version = "0.5.0"
@@ -612,9 +697,9 @@ dependencies = [
 
 [[package]]
 name = "iana-time-zone"
-version = "0.1.64"
+version = "0.1.65"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "33e57f83510bb73707521ebaffa789ec8caf86f9657cad665b092b581d40e9fb"
+checksum = "e31bc9ad994ba00e440a8aa5c9ef0ec67d5cb5e5cb0cc7f8b744a35b389cc470"
 dependencies = [
  "android_system_properties",
  "core-foundation-sys",
@@ -636,12 +721,13 @@ dependencies = [
 
 [[package]]
 name = "icu_collections"
-version = "2.1.1"
+version = "2.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4c6b649701667bbe825c3b7e6388cb521c23d88644678e83c0c4d0a621a34b43"
+checksum = "2984d1cd16c883d7935b9e07e44071dca8d917fd52ecc02c04d5fa0b5a3f191c"
 dependencies = [
  "displaydoc",
  "potential_utf",
+ "utf8_iter",
  "yoke",
  "zerofrom",
  "zerovec",
@@ -649,9 +735,9 @@ dependencies = [
 
 [[package]]
 name = "icu_locale_core"
-version = "2.1.1"
+version = "2.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "edba7861004dd3714265b4db54a3c390e880ab658fec5f7db895fae2046b5bb6"
+checksum = "92219b62b3e2b4d88ac5119f8904c10f8f61bf7e95b640d25ba3075e6cac2c29"
 dependencies = [
  "displaydoc",
  "litemap",
@@ -662,9 +748,9 @@ dependencies = [
 
 [[package]]
 name = "icu_normalizer"
-version = "2.1.1"
+version = "2.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5f6c8828b67bf8908d82127b2054ea1b4427ff0230ee9141c54251934ab1b599"
+checksum = "c56e5ee99d6e3d33bd91c5d85458b6005a22140021cc324cea84dd0e72cff3b4"
 dependencies = [
  "icu_collections",
  "icu_normalizer_data",
@@ -676,15 +762,15 @@ dependencies = [
 
 [[package]]
 name = "icu_normalizer_data"
-version = "2.1.1"
+version = "2.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7aedcccd01fc5fe81e6b489c15b247b8b0690feb23304303a9e560f37efc560a"
+checksum = "da3be0ae77ea334f4da67c12f149704f19f81d1adf7c51cf482943e84a2bad38"
 
 [[package]]
 name = "icu_properties"
-version = "2.1.2"
+version = "2.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "020bfc02fe870ec3a66d93e677ccca0562506e5872c650f893269e08615d74ec"
+checksum = "bee3b67d0ea5c2cca5003417989af8996f8604e34fb9ddf96208a033901e70de"
 dependencies = [
  "icu_collections",
  "icu_locale_core",
@@ -696,15 +782,15 @@ dependencies = [
 
 [[package]]
 name = "icu_properties_data"
-version = "2.1.2"
+version = "2.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "616c294cf8d725c6afcd8f55abc17c56464ef6211f9ed59cccffe534129c77af"
+checksum = "8e2bbb201e0c04f7b4b3e14382af113e17ba4f63e2c9d2ee626b720cbce54a14"
 
 [[package]]
 name = "icu_provider"
-version = "2.1.1"
+version = "2.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "85962cf0ce02e1e0a629cc34e7ca3e373ce20dda4c4d7294bbd0bf1fdb59e614"
+checksum = "139c4cf31c8b5f33d7e199446eff9c1e02decfc2f0eec2c8d71f65befa45b421"
 dependencies = [
  "displaydoc",
  "icu_locale_core",
@@ -715,6 +801,12 @@ dependencies = [
  "zerovec",
 ]
 
+[[package]]
+name = "id-arena"
+version = "2.3.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "3d3067d79b975e8844ca9eb072e16b31c3c1c36928edf9c6789548c524d0d954"
+
 [[package]]
 name = "idna"
 version = "1.1.0"
@@ -728,9 +820,9 @@ dependencies = [
 
 [[package]]
 name = "idna_adapter"
-version = "1.2.1"
+version = "1.2.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3acae9609540aa318d1bc588455225fb2085b9ed0c4f6bd0d9d5bcd86f1a0344"
+checksum = "cb68373c0d6620ef8105e855e7745e18b0d00d3bdb07fb532e434244cdb9a714"
 dependencies = [
  "icu_normalizer",
  "icu_properties",
@@ -742,6 +834,18 @@ version = "0.2.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "9007da9cacbd3e6343da136e98b0d2df013f553d35bdec8b518f07bea768e19c"
 
+[[package]]
+name = "indexmap"
+version = "2.14.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d466e9454f08e4a911e14806c24e16fba1b4c121d1ea474396f396069cf949d9"
+dependencies = [
+ "equivalent",
+ "hashbrown 0.17.0",
+ "serde",
+ "serde_core",
+]
+
 [[package]]
 name = "is_terminal_polyfill"
 version = "1.70.2"
@@ -768,15 +872,15 @@ dependencies = [
 
 [[package]]
 name = "itoa"
-version = "1.0.17"
+version = "1.0.18"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "92ecc6618181def0457392ccd0ee51198e065e016d1d527a7ac1b6dc7c1f09d2"
+checksum = "8f42a60cbdf9a97f5d2305f08a87dc4e09308d1276d28c869c684d7777685682"
 
 [[package]]
 name = "jiff"
-version = "0.2.18"
+version = "0.2.24"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e67e8da4c49d6d9909fe03361f9b620f58898859f5c7aded68351e85e71ecf50"
+checksum = "f00b5dbd620d61dfdcb6007c9c1f6054ebd75319f163d886a9055cec1155073d"
 dependencies = [
  "jiff-static",
  "log",
@@ -787,9 +891,9 @@ dependencies = [
 
 [[package]]
 name = "jiff-static"
-version = "0.2.18"
+version = "0.2.24"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e0c84ee7f197eca9a86c6fd6cb771e55eb991632f15f2bc3ca6ec838929e6e78"
+checksum = "e000de030ff8022ea1da3f466fbb0f3a809f5e51ed31f6dd931c35181ad8e6d7"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -808,10 +912,12 @@ dependencies = [
 
 [[package]]
 name = "js-sys"
-version = "0.3.85"
+version = "0.3.97"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8c942ebf8e95485ca0d52d97da7c5a2c387d0e7f0ba4c35e93bfcaee045955b3"
+checksum = "a1840c94c045fbcf8ba2812c95db44499f7c64910a912551aaaa541decebcacf"
 dependencies = [
+ "cfg-if",
+ "futures-util",
  "once_cell",
  "wasm-bindgen",
 ]
@@ -828,11 +934,17 @@ version = "1.3.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "830d08ce1d1d941e6b30645f1a0eb5643013d835ce3779a5fc208261dbe10f55"
 
+[[package]]
+name = "leb128fmt"
+version = "0.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "09edd9e8b54e49e587e4f6295a7d29c3ea94d469cb40ab8ca70b288248a81db2"
+
 [[package]]
 name = "libc"
-version = "0.2.180"
+version = "0.2.186"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bcc35a38544a891a5f7c865aca548a982ccb3b8650a5b06d0fd33a10283c56fc"
+checksum = "68ab91017fe16c622486840e4c83c9a37afeff978bd239b5293d61ece587de66"
 
 [[package]]
 name = "libflate"
@@ -866,15 +978,15 @@ dependencies = [
 
 [[package]]
 name = "libm"
-version = "0.2.15"
+version = "0.2.16"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f9fbbcab51052fe104eb5e5d351cf728d30a5be1fe14d9be8a3b097481fb97de"
+checksum = "b6d2cec3eae94f9f509c767b45932f1ada8350c4bdb85af2fcab4a3c14807981"
 
 [[package]]
 name = "libz-sys"
-version = "1.1.23"
+version = "1.1.28"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "15d118bbf3771060e7311cc7bb0545b01d08a8b4a7de949198dec1fa0ca1c0f7"
+checksum = "fc3a226e576f50782b3305c5ccf458698f92798987f551c6a02efe8276721e22"
 dependencies = [
  "cc",
  "cmake",
@@ -891,15 +1003,15 @@ checksum = "bfae20f6b19ad527b550c223fddc3077a547fc70cda94b9b566575423fd303ee"
 
 [[package]]
 name = "linux-raw-sys"
-version = "0.11.0"
+version = "0.12.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "df1d3c3b53da64cf5760482273a98e575c651a67eec7f77df96b5b642de8f039"
+checksum = "32a66949e030da00e8c7d4434b251670a91556f4144941d37452769c25d58a53"
 
 [[package]]
 name = "litemap"
-version = "0.8.1"
+version = "0.8.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6373607a59f0be73a39b6fe456b8192fcc3585f602af20751600e974dd455e77"
+checksum = "92daf443525c4cce67b150400bc2316076100ce0b3686209eb8cf3c31612e6f0"
 
 [[package]]
 name = "log"
@@ -930,9 +1042,9 @@ dependencies = [
 
 [[package]]
 name = "memchr"
-version = "2.7.6"
+version = "2.8.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f52b00d39961fc5b2736ea853c9cc86238e165017a493d1d5c8eac6bdc4cc273"
+checksum = "f8ca58f447f06ed17d5fc4043ce1b10dd205e060fb3ce5b979b8ed8e59ff3f79"
 
 [[package]]
 name = "minimal-lexical"
@@ -952,16 +1064,16 @@ dependencies = [
 
 [[package]]
 name = "nalgebra"
-version = "0.33.2"
+version = "0.33.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "26aecdf64b707efd1310e3544d709c5c0ac61c13756046aaaba41be5c4f66a3b"
+checksum = "9d43ddcacf343185dfd6de2ee786d9e8b1c2301622afab66b6c73baf9882abfd"
 dependencies = [
  "approx",
  "matrixmultiply",
  "num-complex 0.4.6",
  "num-rational 0.4.2",
  "num-traits",
- "rand 0.8.5",
+ "rand 0.8.6",
  "rand_distr 0.4.3",
  "simba",
  "typenum",
@@ -992,7 +1104,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "180f724d496e84764e8ecf28fbe1da74ef231ec4ba15be65a9100be8445d73e3"
 dependencies = [
  "ndarray",
- "rand 0.9.2",
+ "rand 0.9.4",
  "rand_distr 0.5.1",
 ]
 
@@ -1150,9 +1262,9 @@ dependencies = [
 
 [[package]]
 name = "once_cell"
-version = "1.21.3"
+version = "1.21.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "42f5e15c9953c5e4ccceeb2e7382a716482c34515315f7b03532b8b4e8393d2d"
+checksum = "9f7c3e4beb33f85d45ae3e3a1792185706c8e16d043238c593331cc7cd313b50"
 
 [[package]]
 name = "once_cell_polyfill"
@@ -1162,18 +1274,18 @@ checksum = "384b8ab6d37215f3c5301a95a4accb5d64aa607f1fcb26a11b5303878451b4fe"
 
 [[package]]
 name = "openssl-src"
-version = "300.5.4+3.5.4"
+version = "300.6.0+3.6.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a507b3792995dae9b0df8a1c1e3771e8418b7c2d9f0baeba32e6fe8b06c7cb72"
+checksum = "a8e8cbfd3a4a8c8f089147fd7aaa33cf8c7450c4d09f8f80698a0cf093abeff4"
 dependencies = [
  "cc",
 ]
 
 [[package]]
 name = "openssl-sys"
-version = "0.9.111"
+version = "0.9.115"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "82cab2d520aa75e3c58898289429321eb788c3106963d0dc886ec7a5f4adc321"
+checksum = "158fe5b292746440aa6e7a7e690e55aeb72d41505e2804c23c6973ad0e9c9781"
 dependencies = [
  "cc",
  "libc",
@@ -1194,32 +1306,38 @@ version = "2.3.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "9b4f627cb1b25917193a259e49bdad08f671f8d9708acfd5fe0a8c1455d87220"
 
+[[package]]
+name = "pin-project-lite"
+version = "0.2.17"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a89322df9ebe1c1578d689c92318e070967d1042b512afbe49518723f4e6d5cd"
+
 [[package]]
 name = "pkg-config"
-version = "0.3.32"
+version = "0.3.33"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7edddbd0b52d732b21ad9a5fab5c704c14cd949e5e9a1ec5929a24fded1b904c"
+checksum = "19f132c84eca552bf34cab8ec81f1c1dcc229b811638f9d283dceabe58c5569e"
 
 [[package]]
 name = "portable-atomic"
-version = "1.13.0"
+version = "1.13.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f89776e4d69bb58bc6993e99ffa1d11f228b839984854c7daeb5d37f87cbe950"
+checksum = "c33a9471896f1c69cecef8d20cbe2f7accd12527ce60845ff44c153bb2a21b49"
 
 [[package]]
 name = "portable-atomic-util"
-version = "0.2.4"
+version = "0.2.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d8a2f0d8d040d7848a709caf78912debcc3f33ee4b3cac47d73d1e1069e83507"
+checksum = "c2a106d1259c23fac8e543272398ae0e3c0b8d33c88ed73d0cc71b0f1d902618"
 dependencies = [
  "portable-atomic",
 ]
 
 [[package]]
 name = "potential_utf"
-version = "0.1.4"
+version = "0.1.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b73949432f5e2a09657003c25bca5e19a0e9c84f8058ca374f49e0ebe605af77"
+checksum = "0103b1cef7ec0cf76490e969665504990193874ea05c85ff9bab8b911d0a0564"
 dependencies = [
  "zerovec",
 ]
@@ -1233,6 +1351,16 @@ dependencies = [
  "zerocopy",
 ]
 
+[[package]]
+name = "prettyplease"
+version = "0.2.37"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "479ca8adacdd7ce8f1fb39ce9ecccbfe93a3f1344b3d0d97f20bc0196208f62b"
+dependencies = [
+ "proc-macro2",
+ "syn",
+]
+
 [[package]]
 name = "primal-check"
 version = "0.3.4"
@@ -1244,9 +1372,9 @@ dependencies = [
 
 [[package]]
 name = "proc-macro2"
-version = "1.0.105"
+version = "1.0.106"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "535d180e0ecab6268a3e718bb9fd44db66bbbc256257165fc699dadf70d16fe7"
+checksum = "8fd00f0bb2e90d81d1044c2b32617f68fcb9fa3bb7640c23e9c748e53fb30934"
 dependencies = [
  "unicode-ident",
 ]
@@ -1259,9 +1387,9 @@ checksum = "a1d01941d82fa2ab50be1e79e6714289dd7cde78eba4c074bc5a4374f650dfe0"
 
 [[package]]
 name = "quote"
-version = "1.0.43"
+version = "1.0.45"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dc74d9a594b72ae6656596548f56f667211f8a97b3d4c3d467150794690dc40a"
+checksum = "41f2619966050689382d2b44f664f4bc593e129785a36d6ee376ddf37259b924"
 dependencies = [
  "proc-macro2",
 ]
@@ -1272,6 +1400,12 @@ version = "5.3.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "69cdb34c158ceb288df11e18b4bd39de994f6657d83847bdffdbd7f346754b0f"
 
+[[package]]
+name = "r-efi"
+version = "6.0.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "f8dcc9c7d52a811697d2151c701e0d08956f92b0e24136cf4cf27b57a6a0d9bf"
+
 [[package]]
 name = "rand"
 version = "0.6.5"
@@ -1293,9 +1427,9 @@ dependencies = [
 
 [[package]]
 name = "rand"
-version = "0.8.5"
+version = "0.8.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "34af8d1a0e25924bc5b7c43c079c942339d8f0a8b57c39049bef581b46327404"
+checksum = "5ca0ecfa931c29007047d1bc58e623ab12e5590e8c7cc53200d5202b69266d8a"
 dependencies = [
  "libc",
  "rand_chacha 0.3.1",
@@ -1304,14 +1438,25 @@ dependencies = [
 
 [[package]]
 name = "rand"
-version = "0.9.2"
+version = "0.9.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6db2770f06117d490610c7488547d543617b21bfa07796d7a12f6f1bd53850d1"
+checksum = "44c5af06bb1b7d3216d91932aed5265164bf384dc89cd6ba05cf59a35f5f76ea"
 dependencies = [
  "rand_chacha 0.9.0",
  "rand_core 0.9.5",
 ]
 
+[[package]]
+name = "rand"
+version = "0.10.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d2e8e8bcc7961af1fdac401278c6a831614941f6164ee3bf4ce61b7edb162207"
+dependencies = [
+ "chacha20",
+ "getrandom 0.4.2",
+ "rand_core 0.10.1",
+]
+
 [[package]]
 name = "rand_chacha"
 version = "0.1.1"
@@ -1375,6 +1520,12 @@ dependencies = [
  "getrandom 0.3.4",
 ]
 
+[[package]]
+name = "rand_core"
+version = "0.10.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "63b8176103e19a2643978565ca18b50549f6101881c443590420e4dc998a3c69"
+
 [[package]]
 name = "rand_distr"
 version = "0.4.3"
@@ -1382,7 +1533,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "32cb0b9bc82b0a0876c2dd994a7e7a2683d3e7390ca40e6886785ef0c7e3ee31"
 dependencies = [
  "num-traits",
- "rand 0.8.5",
+ "rand 0.8.6",
 ]
 
 [[package]]
@@ -1392,7 +1543,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "6a8615d50dcf34fa31f7ab52692afec947c4dd0ab803cc87cb3b0b4570ff7463"
 dependencies = [
  "num-traits",
- "rand 0.9.2",
+ "rand 0.9.4",
 ]
 
 [[package]]
@@ -1465,9 +1616,9 @@ checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3"
 
 [[package]]
 name = "rayon"
-version = "1.11.0"
+version = "1.12.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "368f01d005bf8fd9b1206fb6fa653e6c4a81ceb1466406b81792d87c5677a58f"
+checksum = "fb39b166781f92d482534ef4b4b1b2568f42613b53e5b6c160e24cfbfa30926d"
 dependencies = [
  "either",
  "rayon-core",
@@ -1494,9 +1645,9 @@ dependencies = [
 
 [[package]]
 name = "regex"
-version = "1.12.2"
+version = "1.12.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "843bc0191f75f3e22651ae5f1e72939ab2f72a4bc30fa80a066bd66edefc24d4"
+checksum = "e10754a14b9137dd7b1e3e5b0493cc9171fdd105e0ab477f51b72e7f3ac0e276"
 dependencies = [
  "aho-corasick",
  "memchr",
@@ -1506,9 +1657,9 @@ dependencies = [
 
 [[package]]
 name = "regex-automata"
-version = "0.4.13"
+version = "0.4.14"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5276caf25ac86c8d810222b3dbb938e512c55c6831a10f3e6ed1c93b84041f1c"
+checksum = "6e1dd4122fc1595e8162618945476892eefca7b88c52820e74af6262213cae8f"
 dependencies = [
  "aho-corasick",
  "memchr",
@@ -1517,9 +1668,9 @@ dependencies = [
 
 [[package]]
 name = "regex-syntax"
-version = "0.8.8"
+version = "0.8.10"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7a2d987857b319362043e95f5353c0535c1f58eec5336fdfcf626430af7def58"
+checksum = "dc897dd8d9e8bd1ed8cdad82b5966c3e0ecae09fb1907d58efaa013543185d0a"
 
 [[package]]
 name = "rle-decode-fast"
@@ -1557,9 +1708,9 @@ checksum = "08d43f7aa6b08d49f382cde6a7982047c3426db949b1424bc4b7ec9ae12c6ce2"
 
 [[package]]
 name = "rustc-hash"
-version = "2.1.1"
+version = "2.1.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "357703d41365b4b27c590e3ed91eabb1b663f07c4c084095e60cbed4362dff0d"
+checksum = "94300abf3f1ae2e2b8ffb7b58043de3d399c73fa6f4b73826402a5c457614dbe"
 
 [[package]]
 name = "rustc_version"
@@ -1567,7 +1718,7 @@ version = "0.1.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "c5f5376ea5e30ce23c03eb77cbe4962b988deead10910c372b226388b594c084"
 dependencies = [
- "semver",
+ "semver 0.1.20",
 ]
 
 [[package]]
@@ -1586,11 +1737,11 @@ dependencies = [
 
 [[package]]
 name = "rustix"
-version = "1.1.3"
+version = "1.1.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "146c9e247ccc180c1f61615433868c99f3de3ae256a30a43b49f67c2d9171f34"
+checksum = "b6fe4565b9518b83ef4f91bb47ce29620ca828bd32cb7e408f0062e9930ba190"
 dependencies = [
- "bitflags 2.10.0",
+ "bitflags 2.11.1",
  "errno",
  "libc",
  "linux-raw-sys",
@@ -1623,9 +1774,9 @@ dependencies = [
 
 [[package]]
 name = "scirs2-core"
-version = "0.1.2"
+version = "0.1.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1f445aa31a7198e52d196289aed186d001ebf5b91596c32d8eec68a9130188d7"
+checksum = "57fae4a1e91029061f546564ead071fec32618324d429a518ce430463676cefb"
 dependencies = [
  "cc",
  "chrono",
@@ -1639,7 +1790,7 @@ dependencies = [
  "num-traits",
  "num_cpus",
  "once_cell",
- "rand 0.9.2",
+ "rand 0.9.4",
  "rand_chacha 0.9.0",
  "rand_distr 0.5.1",
  "rayon",
@@ -1649,14 +1800,15 @@ dependencies = [
  "statrs",
  "thiserror 2.0.18",
  "uuid",
- "wide 1.1.1",
+ "wide 1.3.0",
+ "windows-sys 0.52.0",
 ]
 
 [[package]]
 name = "scirs2-fft"
-version = "0.1.2"
+version = "0.1.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d4a950b5bc2aee8f6dc95f586ea50796b4906dc47ed6122555b2b58fc5be5144"
+checksum = "dbfa951b863bc756663d667215a92a9eb92237809d588aaae17a876a79b1c6d8"
 dependencies = [
  "num_cpus",
  "rustfft",
@@ -1669,9 +1821,9 @@ dependencies = [
 
 [[package]]
 name = "scirs2-integrate"
-version = "0.1.2"
+version = "0.1.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c3c7640e7cc9914a2be03bb69970833c4275c9559fad3a5f27f1cc9f424cc1b6"
+checksum = "801cc2f9d83c111c4fdd360ebf307cc93645b7955cd239c6d6e16c58df674dc9"
 dependencies = [
  "half",
  "halton",
@@ -1690,6 +1842,12 @@ version = "0.1.20"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "d4f410fedcf71af0345d7607d246e7ad15faaadd49d240ee3b24e5dc21a820ac"
 
+[[package]]
+name = "semver"
+version = "1.0.28"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "8a7852d02fc848982e0c167ef163aaff9cd91dc640ba85e263cb1ce46fae51cd"
+
 [[package]]
 name = "serde"
 version = "1.0.228"
@@ -1754,9 +1912,15 @@ dependencies = [
 
 [[package]]
 name = "simd-adler32"
-version = "0.3.8"
+version = "0.3.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e320a6c5ad31d271ad523dcf3ad13e2767ad8b1cb8f047f75a8aeaf8da139da2"
+checksum = "703d5c7ef118737c72f1af64ad2f6f8c5e1921f818cdcb97b8fe6fc69bf66214"
+
+[[package]]
+name = "slab"
+version = "0.4.12"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0c790de23124f9ab44544d7ac05d60440adc586479ce501c1d6d7da3cd8c9cf5"
 
 [[package]]
 name = "smallvec"
@@ -1799,7 +1963,7 @@ dependencies = [
  "approx",
  "nalgebra",
  "num-traits",
- "rand 0.8.5",
+ "rand 0.8.6",
 ]
 
 [[package]]
@@ -1829,9 +1993,9 @@ dependencies = [
 
 [[package]]
 name = "syn"
-version = "2.0.114"
+version = "2.0.117"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d4d107df263a3013ef9b1879b0df87d706ff80f65a86ea879bd9c31f9b307c2a"
+checksum = "e665b8803e7b1d2a727f4023456bbbbe74da67099c585258af0ad9c5013b9b99"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -1851,12 +2015,12 @@ dependencies = [
 
 [[package]]
 name = "tempfile"
-version = "3.24.0"
+version = "3.27.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "655da9c7eb6305c55742045d5a8d2037996d61d8de95806335c7c86ce0f82e9c"
+checksum = "32497e9a4c7b38532efcdebeef879707aa9f794296a4f0244f6f69e9bc8574bd"
 dependencies = [
  "fastrand",
- "getrandom 0.3.4",
+ "getrandom 0.4.2",
  "once_cell",
  "rustix",
  "windows-sys 0.61.2",
@@ -1904,9 +2068,9 @@ dependencies = [
 
 [[package]]
 name = "tinystr"
-version = "0.8.2"
+version = "0.8.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "42d3e9c45c09de15d06dd8acf5f4e0e399e85927b7f00711024eb7ae10fa4869"
+checksum = "c8323304221c2a851516f22236c5722a72eaa19749016521d6dff0824447d96d"
 dependencies = [
  "displaydoc",
  "zerovec",
@@ -1924,15 +2088,21 @@ dependencies = [
 
 [[package]]
 name = "typenum"
-version = "1.19.0"
+version = "1.20.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "562d481066bde0658276a35467c4af00bdc6ee726305698a55b86e61d7ad82bb"
+checksum = "40ce102ab67701b8526c123c1bab5cbe42d7040ccfd0f64af1a385808d2f43de"
 
 [[package]]
 name = "unicode-ident"
-version = "1.0.22"
+version = "1.0.24"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "e6e4313cd5fcd3dad5cafa179702e2b244f760991f45397d14d4ebf38247da75"
+
+[[package]]
+name = "unicode-xid"
+version = "0.2.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9312f7c4f6ff9069b165498234ce8be658059c6728633667c526e27dc2cf1df5"
+checksum = "ebc1c04c71510c7f702b52b7c350734c9ff1295c464a03335b00bb84fc54f853"
 
 [[package]]
 name = "url"
@@ -1960,11 +2130,11 @@ checksum = "06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821"
 
 [[package]]
 name = "uuid"
-version = "1.19.0"
+version = "1.23.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e2e054861b4bd027cd373e18e8d8d8e6548085000e41290d95ce0c373a654b4a"
+checksum = "ddd74a9687298c6858e9b88ec8935ec45d22e8fd5e6394fa1bd4e99a87789c76"
 dependencies = [
- "getrandom 0.3.4",
+ "getrandom 0.4.2",
  "js-sys",
  "serde_core",
  "wasm-bindgen",
@@ -1984,18 +2154,27 @@ checksum = "ccf3ec651a847eb01de73ccad15eb7d99f80485de043efb2f370cd654f4ea44b"
 
 [[package]]
 name = "wasip2"
-version = "1.0.2+wasi-0.2.9"
+version = "1.0.3+wasi-0.2.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9517f9239f02c069db75e65f174b3da828fe5f5b945c4dd26bd25d89c03ebcf5"
+checksum = "20064672db26d7cdc89c7798c48a0fdfac8213434a1186e5ef29fd560ae223d6"
 dependencies = [
- "wit-bindgen",
+ "wit-bindgen 0.57.1",
+]
+
+[[package]]
+name = "wasip3"
+version = "0.4.0+wasi-0.3.0-rc-2026-01-06"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "5428f8bf88ea5ddc08faddef2ac4a67e390b88186c703ce6dbd955e1c145aca5"
+dependencies = [
+ "wit-bindgen 0.51.0",
 ]
 
 [[package]]
 name = "wasm-bindgen"
-version = "0.2.108"
+version = "0.2.120"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "64024a30ec1e37399cf85a7ffefebdb72205ca1c972291c51512360d90bd8566"
+checksum = "df52b6d9b87e0c74c9edfa1eb2d9bf85e5d63515474513aa50fa181b3c4f5db1"
 dependencies = [
  "cfg-if",
  "once_cell",
@@ -2006,9 +2185,9 @@ dependencies = [
 
 [[package]]
 name = "wasm-bindgen-macro"
-version = "0.2.108"
+version = "0.2.120"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "008b239d9c740232e71bd39e8ef6429d27097518b6b30bdf9086833bd5b6d608"
+checksum = "78b1041f495fb322e64aca85f5756b2172e35cd459376e67f2a6c9dffcedb103"
 dependencies = [
  "quote",
  "wasm-bindgen-macro-support",
@@ -2016,9 +2195,9 @@ dependencies = [
 
 [[package]]
 name = "wasm-bindgen-macro-support"
-version = "0.2.108"
+version = "0.2.120"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5256bae2d58f54820e6490f9839c49780dff84c65aeab9e772f15d5f0e913a55"
+checksum = "9dcd0ff20416988a18ac686d4d4d0f6aae9ebf08a389ff5d29012b05af2a1b41"
 dependencies = [
  "bumpalo",
  "proc-macro2",
@@ -2029,13 +2208,47 @@ dependencies = [
 
 [[package]]
 name = "wasm-bindgen-shared"
-version = "0.2.108"
+version = "0.2.120"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1f01b580c9ac74c8d8f0c0e4afb04eeef2acf145458e52c03845ee9cd23e3d12"
+checksum = "49757b3c82ebf16c57d69365a142940b384176c24df52a087fb748e2085359ea"
 dependencies = [
  "unicode-ident",
 ]
 
+[[package]]
+name = "wasm-encoder"
+version = "0.244.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "990065f2fe63003fe337b932cfb5e3b80e0b4d0f5ff650e6985b1048f62c8319"
+dependencies = [
+ "leb128fmt",
+ "wasmparser",
+]
+
+[[package]]
+name = "wasm-metadata"
+version = "0.244.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "bb0e353e6a2fbdc176932bbaab493762eb1255a7900fe0fea1a2f96c296cc909"
+dependencies = [
+ "anyhow",
+ "indexmap",
+ "wasm-encoder",
+ "wasmparser",
+]
+
+[[package]]
+name = "wasmparser"
+version = "0.244.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "47b807c72e1bac69382b3a6fb3dbe8ea4c0ed87ff5629b8685ae6b9a611028fe"
+dependencies = [
+ "bitflags 2.11.1",
+ "hashbrown 0.15.5",
+ "indexmap",
+ "semver 1.0.28",
+]
+
 [[package]]
 name = "wide"
 version = "0.7.33"
@@ -2048,9 +2261,9 @@ dependencies = [
 
 [[package]]
 name = "wide"
-version = "1.1.1"
+version = "1.3.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ac11b009ebeae802ed758530b6496784ebfee7a87b9abfbcaf3bbe25b814eb25"
+checksum = "c9479f84a757f819cfab37295955906479181395de83add28f74975fde083141"
 dependencies = [
  "bytemuck",
  "safe_arch 1.0.0",
@@ -2139,9 +2352,9 @@ dependencies = [
 
 [[package]]
 name = "windows-sys"
-version = "0.59.0"
+version = "0.52.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1e38bc4d79ed67fd075bcc251a1c39b32a1776bbe92e5bef1f0bf1f8c531853b"
+checksum = "282be5f36a8ce781fad8c8ae18fa3f9beff57ec1b52cb3de0789201425d9a33d"
 dependencies = [
  "windows-targets",
 ]
@@ -2224,12 +2437,100 @@ name = "wit-bindgen"
 version = "0.51.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "d7249219f66ced02969388cf2bb044a09756a083d0fab1e566056b04d9fbcaa5"
+dependencies = [
+ "wit-bindgen-rust-macro",
+]
+
+[[package]]
+name = "wit-bindgen"
+version = "0.57.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "1ebf944e87a7c253233ad6766e082e3cd714b5d03812acc24c318f549614536e"
+
+[[package]]
+name = "wit-bindgen-core"
+version = "0.51.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "ea61de684c3ea68cb082b7a88508a8b27fcc8b797d738bfc99a82facf1d752dc"
+dependencies = [
+ "anyhow",
+ "heck",
+ "wit-parser",
+]
+
+[[package]]
+name = "wit-bindgen-rust"
+version = "0.51.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "b7c566e0f4b284dd6561c786d9cb0142da491f46a9fbed79ea69cdad5db17f21"
+dependencies = [
+ "anyhow",
+ "heck",
+ "indexmap",
+ "prettyplease",
+ "syn",
+ "wasm-metadata",
+ "wit-bindgen-core",
+ "wit-component",
+]
+
+[[package]]
+name = "wit-bindgen-rust-macro"
+version = "0.51.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0c0f9bfd77e6a48eccf51359e3ae77140a7f50b1e2ebfe62422d8afdaffab17a"
+dependencies = [
+ "anyhow",
+ "prettyplease",
+ "proc-macro2",
+ "quote",
+ "syn",
+ "wit-bindgen-core",
+ "wit-bindgen-rust",
+]
+
+[[package]]
+name = "wit-component"
+version = "0.244.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "9d66ea20e9553b30172b5e831994e35fbde2d165325bec84fc43dbf6f4eb9cb2"
+dependencies = [
+ "anyhow",
+ "bitflags 2.11.1",
+ "indexmap",
+ "log",
+ "serde",
+ "serde_derive",
+ "serde_json",
+ "wasm-encoder",
+ "wasm-metadata",
+ "wasmparser",
+ "wit-parser",
+]
+
+[[package]]
+name = "wit-parser"
+version = "0.244.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "ecc8ac4bc1dc3381b7f59c34f00b67e18f910c2c0f50015669dde7def656a736"
+dependencies = [
+ "anyhow",
+ "id-arena",
+ "indexmap",
+ "log",
+ "semver 1.0.28",
+ "serde",
+ "serde_derive",
+ "serde_json",
+ "unicode-xid",
+ "wasmparser",
+]
 
 [[package]]
 name = "writeable"
-version = "0.6.2"
+version = "0.6.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9edde0db4769d2dc68579893f2306b26c6ecfbe0ef499b013d731b7b9247e0b9"
+checksum = "1ffae5123b2d3fc086436f8834ae3ab053a283cfac8fe0a0b8eaae044768a4c4"
 
 [[package]]
 name = "xpclrs"
@@ -2243,10 +2544,10 @@ dependencies = [
  "itertools 0.14.0",
  "log",
  "niffler",
- "rand 0.9.2",
+ "rand 0.10.1",
  "rayon",
  "rust-htslib",
- "rustc-hash 2.1.1",
+ "rustc-hash 2.1.2",
  "scirs2-integrate",
  "statistical",
  "statrs",
@@ -2263,9 +2564,9 @@ dependencies = [
 
 [[package]]
 name = "yoke"
-version = "0.8.1"
+version = "0.8.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "72d6e5c6afb84d73944e5cedb052c4680d5657337201555f9f2a16b7406d4954"
+checksum = "abe8c5fda708d9ca3df187cae8bfb9ceda00dd96231bed36e445a1a48e66f9ca"
 dependencies = [
  "stable_deref_trait",
  "yoke-derive",
@@ -2274,9 +2575,9 @@ dependencies = [
 
 [[package]]
 name = "yoke-derive"
-version = "0.8.1"
+version = "0.8.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b659052874eb698efe5b9e8cf382204678a0086ebf46982b79d6ca3182927e5d"
+checksum = "de844c262c8848816172cef550288e7dc6c7b7814b4ee56b3e1553f275f1858e"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -2286,18 +2587,18 @@ dependencies = [
 
 [[package]]
 name = "zerocopy"
-version = "0.8.33"
+version = "0.8.48"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "668f5168d10b9ee831de31933dc111a459c97ec93225beb307aed970d1372dfd"
+checksum = "eed437bf9d6692032087e337407a86f04cd8d6a16a37199ed57949d415bd68e9"
 dependencies = [
  "zerocopy-derive",
 ]
 
 [[package]]
 name = "zerocopy-derive"
-version = "0.8.33"
+version = "0.8.48"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2c7962b26b0a8685668b671ee4b54d007a67d4eaf05fda79ac0ecf41e32270f1"
+checksum = "70e3cd084b1788766f53af483dd21f93881ff30d7320490ec3ef7526d203bad4"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -2306,18 +2607,18 @@ dependencies = [
 
 [[package]]
 name = "zerofrom"
-version = "0.1.6"
+version = "0.1.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "50cc42e0333e05660c3587f3bf9d0478688e15d870fab3346451ce7f8c9fbea5"
+checksum = "69faa1f2a1ea75661980b013019ed6687ed0e83d069bc1114e2cc74c6c04c4df"
 dependencies = [
  "zerofrom-derive",
 ]
 
 [[package]]
 name = "zerofrom-derive"
-version = "0.1.6"
+version = "0.1.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d71e5d6e06ab090c67b5e44993ec16b72dcbaabc526db883a360057678b48502"
+checksum = "11532158c46691caf0f2593ea8358fed6bbf68a0315e80aae9bd41fbade684a1"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -2327,9 +2628,9 @@ dependencies = [
 
 [[package]]
 name = "zerotrie"
-version = "0.2.3"
+version = "0.2.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2a59c17a5562d507e4b54960e8569ebee33bee890c70aa3fe7b97e85a9fd7851"
+checksum = "0f9152d31db0792fa83f70fb2f83148effb5c1f5b8c7686c3459e361d9bc20bf"
 dependencies = [
  "displaydoc",
  "yoke",
@@ -2338,9 +2639,9 @@ dependencies = [
 
 [[package]]
 name = "zerovec"
-version = "0.11.5"
+version = "0.11.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6c28719294829477f525be0186d13efa9a3c602f7ec202ca9e353d310fb9a002"
+checksum = "90f911cbc359ab6af17377d242225f4d75119aec87ea711a880987b18cd7b239"
 dependencies = [
  "yoke",
  "zerofrom",
@@ -2349,9 +2650,9 @@ dependencies = [
 
 [[package]]
 name = "zerovec-derive"
-version = "0.11.2"
+version = "0.11.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "eadce39539ca5cb3985590102671f2567e659fca9666581ad3411d59207951f3"
+checksum = "625dc425cab0dca6dc3c3319506e6593dcb08a9f387ea3b284dbd52a92c40555"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -2360,9 +2661,9 @@ dependencies = [
 
 [[package]]
 name = "zmij"
-version = "1.0.16"
+version = "1.0.21"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dfcd145825aace48cff44a8844de64bf75feec3080e0aa5cdbde72961ae51a65"
+checksum = "b8848ee67ecc8aedbaf3e4122217aff892639231befc6a1b58d29fff4c2cabaa"
 
 [[package]]
 name = "zstd"
diff --git a/Cargo.toml b/Cargo.toml
index e3189c1..73e78e9 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -19,7 +19,7 @@ flate2           = "1.0.35"
 itertools        = "0.14.0"
 log              = "0.4"
 niffler          = "2.5.0"
-rand             = "0.9.2"
+rand             = "0.10.1"
 rayon            = "1.10.0"
 rust-htslib      = "0.51.0"
 rustc-hash       = "2.1.1"

From 23f757c97ab64fc83c660bae0e483e98e2e5399c Mon Sep 17 00:00:00 2001
From: Andrea Talenti <23279528+RenzoTale88@users.noreply.github.com>
Date: Wed, 6 May 2026 09:28:54 +0100
Subject: [PATCH 2/6] Update publish crates.io action

---
 .github/workflows/crates.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/crates.yml b/.github/workflows/crates.yml
index 7ba5bbd..e73e58d 100644
--- a/.github/workflows/crates.yml
+++ b/.github/workflows/crates.yml
@@ -19,7 +19,7 @@ jobs:
         run: sudo apt-get update && sudo apt-get install libopenblas-dev
 
       - name: Build
-        run: cargo login --token ${{ secrets.CARGO_REGISTRY_TOKEN }}
+        run: echo "${{ secrets.CARGO_REGISTRY_TOKEN }}" | cargo login
 
       - name: Build
         run: cargo publish --dry-run

From 11ad57e955684d1fdba0c09d6f485eb89ef74aef Mon Sep 17 00:00:00 2001
From: Andrea Talenti <23279528+RenzoTale88@users.noreply.github.com>
Date: Wed, 6 May 2026 09:29:07 +0100
Subject: [PATCH 3/6] Update versions of tools

---
 Cargo.lock | 357 ++++++++++++++++++++++++++++++++++-------------------
 Cargo.toml |   4 +-
 2 files changed, 229 insertions(+), 132 deletions(-)

diff --git a/Cargo.lock b/Cargo.lock
index b727644..e7f4e50 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -23,6 +23,12 @@ dependencies = [
  "memchr",
 ]
 
+[[package]]
+name = "allocator-api2"
+version = "0.2.21"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "683d7910e743518b0e34f1186f92494becacb047c7b6bf616c96772180fef923"
+
 [[package]]
 name = "android_system_properties"
 version = "0.1.5"
@@ -68,7 +74,7 @@ version = "1.1.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "40c48f72fd53cd289104fc64099abca73db4166ad86ea0b4341abe65af83dadc"
 dependencies = [
- "windows-sys 0.61.2",
+ "windows-sys",
 ]
 
 [[package]]
@@ -79,7 +85,7 @@ checksum = "291e6a250ff86cd4a820112fb8898808a366d8f9f58ce16d1f538353ad55747d"
 dependencies = [
  "anstyle",
  "once_cell_polyfill",
- "windows-sys 0.61.2",
+ "windows-sys",
 ]
 
 [[package]]
@@ -185,6 +191,12 @@ version = "1.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b"
 
+[[package]]
+name = "bytes"
+version = "1.11.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "1e748733b7cbc798e1434b6ac524f0c1ff2ab456fe201501e6497c8417a4fc33"
+
 [[package]]
 name = "bzip2"
 version = "0.4.4"
@@ -426,7 +438,7 @@ dependencies = [
  "openssl-sys",
  "pkg-config",
  "vcpkg",
- "windows-sys 0.61.2",
+ "windows-sys",
 ]
 
 [[package]]
@@ -510,7 +522,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "39cab71617ae0d63f51a36d69f866391735b51691dbda63cf6f96d042b63efeb"
 dependencies = [
  "libc",
- "windows-sys 0.61.2",
+ "windows-sys",
 ]
 
 [[package]]
@@ -541,6 +553,12 @@ version = "0.1.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "d9c4f5dac5e15c24eb999c26181a6ca40b39fe946cbe4c263c7209467bc83af2"
 
+[[package]]
+name = "foldhash"
+version = "0.2.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "77ce24cb58228fbb8aa041425bb1050850ac19177686ea6e0f41a70416f56fdb"
+
 [[package]]
 name = "form_urlencoded"
 version = "1.2.2"
@@ -607,9 +625,11 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "899def5c37c4fd7b2664648c28120ecec138e4d395b459e5ca34f9cce2dd77fd"
 dependencies = [
  "cfg-if",
+ "js-sys",
  "libc",
  "r-efi 5.3.0",
  "wasip2",
+ "wasm-bindgen",
 ]
 
 [[package]]
@@ -619,11 +639,13 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "0de51e6874e94e7bf76d726fc5d13ba782deca734ff60d5bb2fb2607c7406555"
 dependencies = [
  "cfg-if",
+ "js-sys",
  "libc",
  "r-efi 6.0.0",
  "rand_core 0.10.1",
  "wasip2",
  "wasip3",
+ "wasm-bindgen",
 ]
 
 [[package]]
@@ -657,7 +679,7 @@ version = "0.15.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "9229cfe53dfd69f0609a49f65461bd93001ea1ef889cd5529dd176593f5338a1"
 dependencies = [
- "foldhash",
+ "foldhash 0.1.5",
 ]
 
 [[package]]
@@ -665,6 +687,11 @@ name = "hashbrown"
 version = "0.17.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "4f467dd6dccf739c208452f8014c75c18bb8301b050ad1cfb27153803edb0f51"
+dependencies = [
+ "allocator-api2",
+ "equivalent",
+ "foldhash 0.2.0",
+]
 
 [[package]]
 name = "heck"
@@ -1013,6 +1040,15 @@ version = "0.8.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "92daf443525c4cce67b150400bc2316076100ce0b3686209eb8cf3c31612e6f0"
 
+[[package]]
+name = "lock_api"
+version = "0.4.14"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "224399e74b87b5f3557511d98dff8b14089b3dadafcab6bb93eab67d3aace965"
+dependencies = [
+ "scopeguard",
+]
+
 [[package]]
 name = "log"
 version = "0.4.29"
@@ -1062,6 +1098,17 @@ dependencies = [
  "simd-adler32",
 ]
 
+[[package]]
+name = "mio"
+version = "1.2.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "50b7e5b27aa02a74bac8c3f23f448f8d87ff11f92d3aac1a6ed369ee08cc56c1"
+dependencies = [
+ "libc",
+ "wasi",
+ "windows-sys",
+]
+
 [[package]]
 name = "nalgebra"
 version = "0.33.3"
@@ -1194,7 +1241,6 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "73f88a1307638156682bada9d7604135552957b7818057dcef22705b4d509495"
 dependencies = [
  "num-traits",
- "serde",
 ]
 
 [[package]]
@@ -1294,6 +1340,70 @@ dependencies = [
  "vcpkg",
 ]
 
+[[package]]
+name = "oxifft"
+version = "0.3.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "66121c5e943a54f0f82eeea85ceb889b3b6cd78c88fe909cd55231c2e6f7782d"
+dependencies = [
+ "hashbrown 0.17.0",
+ "libm",
+ "num-complex 0.4.6",
+ "num-traits",
+ "oxifft-codegen",
+ "rayon",
+ "seahash",
+ "serde",
+ "serde_json",
+ "spin",
+]
+
+[[package]]
+name = "oxifft-codegen"
+version = "0.3.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "628759cd6b9a474d4154baa09e1c351d8c80a5b952180a662b3def8544fae8be"
+dependencies = [
+ "oxifft-codegen-impl",
+ "proc-macro2",
+ "quote",
+ "syn",
+]
+
+[[package]]
+name = "oxifft-codegen-impl"
+version = "0.3.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "41fb1c379387430aaeacbbbd27c577a9c3376557b43b6d8cd8d8c660706d9aa9"
+dependencies = [
+ "proc-macro2",
+ "quote",
+ "syn",
+]
+
+[[package]]
+name = "parking_lot"
+version = "0.12.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "93857453250e3077bd71ff98b6a65ea6621a19bb0f559a85248955ac12c45a1a"
+dependencies = [
+ "lock_api",
+ "parking_lot_core",
+]
+
+[[package]]
+name = "parking_lot_core"
+version = "0.9.12"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "2621685985a2ebf1c516881c026032ac7deafcda1a2c9b7850dc81e3dfcb64c1"
+dependencies = [
+ "cfg-if",
+ "libc",
+ "redox_syscall",
+ "smallvec",
+ "windows-link",
+]
+
 [[package]]
 name = "paste"
 version = "1.0.15"
@@ -1361,15 +1471,6 @@ dependencies = [
  "syn",
 ]
 
-[[package]]
-name = "primal-check"
-version = "0.3.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dc0d895b311e3af9902528fbb8f928688abbd95872819320517cc24ca6b2bd08"
-dependencies = [
- "num-integer",
-]
-
 [[package]]
 name = "proc-macro2"
 version = "1.0.106"
@@ -1487,6 +1588,16 @@ dependencies = [
  "rand_core 0.9.5",
 ]
 
+[[package]]
+name = "rand_chacha"
+version = "0.10.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "3e6af7f3e25ded52c41df4e0b1af2d047e45896c2f3281792ed68a1c243daedb"
+dependencies = [
+ "ppv-lite86",
+ "rand_core 0.10.1",
+]
+
 [[package]]
 name = "rand_core"
 version = "0.3.1"
@@ -1546,6 +1657,16 @@ dependencies = [
  "rand 0.9.4",
 ]
 
+[[package]]
+name = "rand_distr"
+version = "0.6.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "4d431c2703ccf129de4d45253c03f49ebb22b97d6ad79ee3ecfc7e3f4862c1d8"
+dependencies = [
+ "num-traits",
+ "rand 0.10.1",
+]
+
 [[package]]
 name = "rand_hc"
 version = "0.1.0"
@@ -1643,6 +1764,15 @@ dependencies = [
  "rand_core 0.3.1",
 ]
 
+[[package]]
+name = "redox_syscall"
+version = "0.5.18"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "ed2bf2547551a7053d6fdfafda3f938979645c44812fbfcda098faae3f1a362d"
+dependencies = [
+ "bitflags 2.11.1",
+]
+
 [[package]]
 name = "regex"
 version = "1.12.3"
@@ -1680,9 +1810,9 @@ checksum = "3582f63211428f83597b51b2ddb88e2a91a9d52d12831f9d08f5e624e8977422"
 
 [[package]]
 name = "rust-htslib"
-version = "0.51.0"
+version = "1.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "354416dd2300ff9e7aff8ddc747c875d6c5086f83c2cb2599f3692421c2b77fd"
+checksum = "f22161678c3d72e6434c5f3383325dbf88c3cacce665f0c7b4b077fc6e957ba9"
 dependencies = [
  "bio-types",
  "byteorder",
@@ -1721,20 +1851,6 @@ dependencies = [
  "semver 0.1.20",
 ]
 
-[[package]]
-name = "rustfft"
-version = "6.4.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "21db5f9893e91f41798c88680037dba611ca6674703c1a18601b01a72c8adb89"
-dependencies = [
- "num-complex 0.4.6",
- "num-integer",
- "num-traits",
- "primal-check",
- "strength_reduce",
- "transpose",
-]
-
 [[package]]
 name = "rustix"
 version = "1.1.4"
@@ -1745,7 +1861,7 @@ dependencies = [
  "errno",
  "libc",
  "linux-raw-sys",
- "windows-sys 0.61.2",
+ "windows-sys",
 ]
 
 [[package]]
@@ -1774,15 +1890,18 @@ dependencies = [
 
 [[package]]
 name = "scirs2-core"
-version = "0.1.5"
+version = "0.4.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "57fae4a1e91029061f546564ead071fec32618324d429a518ce430463676cefb"
+checksum = "8663bee81d22f9c272f37e9b72add1a6811fcb407cfb0e91e0a7ead6bdbe2c94"
 dependencies = [
  "cc",
  "chrono",
+ "crc32fast",
  "crossbeam",
  "crossbeam-deque",
  "crossbeam-utils",
+ "getrandom 0.3.4",
+ "getrandom 0.4.2",
  "ndarray",
  "ndarray-rand",
  "num-complex 0.4.6",
@@ -1790,28 +1909,27 @@ dependencies = [
  "num-traits",
  "num_cpus",
  "once_cell",
- "rand 0.9.4",
- "rand_chacha 0.9.0",
- "rand_distr 0.5.1",
+ "parking_lot",
+ "rand 0.10.1",
+ "rand_chacha 0.10.0",
+ "rand_distr 0.6.0",
  "rayon",
  "regex",
- "serde",
- "serde_json",
  "statrs",
  "thiserror 2.0.18",
  "uuid",
  "wide 1.3.0",
- "windows-sys 0.52.0",
+ "windows-sys",
 ]
 
 [[package]]
 name = "scirs2-fft"
-version = "0.1.5"
+version = "0.4.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dbfa951b863bc756663d667215a92a9eb92237809d588aaae17a876a79b1c6d8"
+checksum = "03d91a859ae27154cc5bdefabfd4d81e403966cfa9d0b7509e32413c1d5688c9"
 dependencies = [
  "num_cpus",
- "rustfft",
+ "oxifft",
  "scirs2-core",
  "serde",
  "serde_json",
@@ -1821,9 +1939,9 @@ dependencies = [
 
 [[package]]
 name = "scirs2-integrate"
-version = "0.1.5"
+version = "0.4.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "801cc2f9d83c111c4fdd360ebf307cc93645b7955cd239c6d6e16c58df674dc9"
+checksum = "e82c4bfebfa49040cef2494b9284044d475d50388114fadc576b9b9630f6b0d9"
 dependencies = [
  "half",
  "halton",
@@ -1832,10 +1950,24 @@ dependencies = [
  "num_cpus",
  "scirs2-core",
  "scirs2-fft",
+ "serde",
  "sobol",
  "thiserror 2.0.18",
+ "tokio",
 ]
 
+[[package]]
+name = "scopeguard"
+version = "1.2.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "94143f37725109f92c262ed2cf5e59bce7498c01bcc1502d7b9afe439a4e9f49"
+
+[[package]]
+name = "seahash"
+version = "4.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "1c107b6f4780854c8b126e228ea8869f4d7b71260f962fefb57b996b8959ba6b"
+
 [[package]]
 name = "semver"
 version = "0.1.20"
@@ -1897,6 +2029,16 @@ version = "1.3.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "0fda2ff0d084019ba4d7c6f371c95d8fd75ce3524c3cb8fb653a3023f6323e64"
 
+[[package]]
+name = "signal-hook-registry"
+version = "1.4.8"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "c4db69cba1110affc0e9f7bcd48bbf87b3f4fc7c61fc9155afd4c469eb3d6c1b"
+dependencies = [
+ "errno",
+ "libc",
+]
+
 [[package]]
 name = "simba"
 version = "0.9.1"
@@ -1938,6 +2080,22 @@ dependencies = [
  "num-traits",
 ]
 
+[[package]]
+name = "socket2"
+version = "0.6.3"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "3a766e1110788c36f4fa1c2b71b387a7815aa65f88ce0229841826633d93723e"
+dependencies = [
+ "libc",
+ "windows-sys",
+]
+
+[[package]]
+name = "spin"
+version = "0.10.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d5fe4ccb98d9c292d56fec89a5e07da7fc4cf0dc11e156b41793132775d3e591"
+
 [[package]]
 name = "stable_deref_trait"
 version = "1.2.1"
@@ -1966,12 +2124,6 @@ dependencies = [
  "rand 0.8.6",
 ]
 
-[[package]]
-name = "strength_reduce"
-version = "0.2.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fe895eb47f22e2ddd4dabc02bce419d2e643c8e3b585c78158b349195bc24d82"
-
 [[package]]
 name = "strsim"
 version = "0.11.1"
@@ -2023,7 +2175,7 @@ dependencies = [
  "getrandom 0.4.2",
  "once_cell",
  "rustix",
- "windows-sys 0.61.2",
+ "windows-sys",
 ]
 
 [[package]]
@@ -2077,13 +2229,31 @@ dependencies = [
 ]
 
 [[package]]
-name = "transpose"
-version = "0.2.3"
+name = "tokio"
+version = "1.52.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1ad61aed86bc3faea4300c7aee358b4c6d0c8d6ccc36524c96e4c92ccf26e77e"
+checksum = "110a78583f19d5cdb2c5ccf321d1290344e71313c6c37d43520d386027d18386"
 dependencies = [
- "num-integer",
- "strength_reduce",
+ "bytes",
+ "libc",
+ "mio",
+ "parking_lot",
+ "pin-project-lite",
+ "signal-hook-registry",
+ "socket2",
+ "tokio-macros",
+ "windows-sys",
+]
+
+[[package]]
+name = "tokio-macros"
+version = "2.7.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "385a6cb71ab9ab790c5fe8d67f1645e6c450a7ce006a33de03daa956cf70a496"
+dependencies = [
+ "proc-macro2",
+ "quote",
+ "syn",
 ]
 
 [[package]]
@@ -2350,15 +2520,6 @@ dependencies = [
  "windows-link",
 ]
 
-[[package]]
-name = "windows-sys"
-version = "0.52.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "282be5f36a8ce781fad8c8ae18fa3f9beff57ec1b52cb3de0789201425d9a33d"
-dependencies = [
- "windows-targets",
-]
-
 [[package]]
 name = "windows-sys"
 version = "0.61.2"
@@ -2368,70 +2529,6 @@ dependencies = [
  "windows-link",
 ]
 
-[[package]]
-name = "windows-targets"
-version = "0.52.6"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9b724f72796e036ab90c1021d4780d4d3d648aca59e491e6b98e725b84e99973"
-dependencies = [
- "windows_aarch64_gnullvm",
- "windows_aarch64_msvc",
- "windows_i686_gnu",
- "windows_i686_gnullvm",
- "windows_i686_msvc",
- "windows_x86_64_gnu",
- "windows_x86_64_gnullvm",
- "windows_x86_64_msvc",
-]
-
-[[package]]
-name = "windows_aarch64_gnullvm"
-version = "0.52.6"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "32a4622180e7a0ec044bb555404c800bc9fd9ec262ec147edd5989ccd0c02cd3"
-
-[[package]]
-name = "windows_aarch64_msvc"
-version = "0.52.6"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "09ec2a7bb152e2252b53fa7803150007879548bc709c039df7627cabbd05d469"
-
-[[package]]
-name = "windows_i686_gnu"
-version = "0.52.6"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8e9b5ad5ab802e97eb8e295ac6720e509ee4c243f69d781394014ebfe8bbfa0b"
-
-[[package]]
-name = "windows_i686_gnullvm"
-version = "0.52.6"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0eee52d38c090b3caa76c563b86c3a4bd71ef1a819287c19d586d7334ae8ed66"
-
-[[package]]
-name = "windows_i686_msvc"
-version = "0.52.6"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "240948bc05c5e7c6dabba28bf89d89ffce3e303022809e73deaefe4f6ec56c66"
-
-[[package]]
-name = "windows_x86_64_gnu"
-version = "0.52.6"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "147a5c80aabfbf0c7d901cb5895d1de30ef2907eb21fbbab29ca94c5b08b1a78"
-
-[[package]]
-name = "windows_x86_64_gnullvm"
-version = "0.52.6"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d"
-
-[[package]]
-name = "windows_x86_64_msvc"
-version = "0.52.6"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec"
-
 [[package]]
 name = "wit-bindgen"
 version = "0.51.0"
diff --git a/Cargo.toml b/Cargo.toml
index 73e78e9..8bf8446 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -21,8 +21,8 @@ log              = "0.4"
 niffler          = "2.5.0"
 rand             = "0.10.1"
 rayon            = "1.10.0"
-rust-htslib      = "0.51.0"
+rust-htslib      = "1.0.0"
 rustc-hash       = "2.1.1"
-scirs2-integrate = { version = "0.1.0-beta.2", features = ["simd", "parallel"] }
+scirs2-integrate = { version = "0.4.3", features = ["simd", "parallel"] }
 statistical      = "1.0.0"
 statrs           = "0.18.0"

From a4ec07d5fde13284f5f7acd6d06518b2ab63e9b3 Mon Sep 17 00:00:00 2001
From: Andrea Talenti <23279528+RenzoTale88@users.noreply.github.com>
Date: Wed, 6 May 2026 09:31:23 +0100
Subject: [PATCH 4/6] Rename deprecated function

---
 src/methods/mod.rs | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/methods/mod.rs b/src/methods/mod.rs
index 6b3a42b..1192166 100644
--- a/src/methods/mod.rs
+++ b/src/methods/mod.rs
@@ -460,7 +460,7 @@ fn get_window(
         // The window has too many sites; randomly select some
         let mut ix: Vec<usize> = (start_ix..stop_ix)
             .collect::<Vec<usize>>()
-            .choose_multiple(&mut rand::rng(), max_pos_size)
+            .sample(&mut rand::rng(), max_pos_size)
             .cloned()
             .collect::<Vec<usize>>();
         ix.sort();

From 6970192a1b3cee7dd12d8473bb2aff663604f28a Mon Sep 17 00:00:00 2001
From: Andrea Talenti <23279528+RenzoTale88@users.noreply.github.com>
Date: Wed, 6 May 2026 09:55:08 +0100
Subject: [PATCH 5/6] Update version

---
 Cargo.lock | 2 +-
 Cargo.toml | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/Cargo.lock b/Cargo.lock
index e7f4e50..99a5f08 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -2631,7 +2631,7 @@ checksum = "1ffae5123b2d3fc086436f8834ae3ab053a283cfac8fe0a0b8eaae044768a4c4"
 
 [[package]]
 name = "xpclrs"
-version = "1.0.2"
+version = "1.0.3"
 dependencies = [
  "anyhow",
  "clap",
diff --git a/Cargo.toml b/Cargo.toml
index 8bf8446..94ee03b 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "xpclrs"
-version = "1.0.2"
+version = "1.0.3"
 authors = ["Andrea Talenti"]
 edition = "2021"
 license = "MIT"

From 666234a1e57cabcf85c09d90eca465bbb75703f3 Mon Sep 17 00:00:00 2001
From: Andrea Talenti <23279528+RenzoTale88@users.noreply.github.com>
Date: Wed, 6 May 2026 09:56:34 +0100
Subject: [PATCH 6/6] Upddate changelog

---
 CHANGELOG.md | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index db03c9e..7e9ec38 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,6 +5,13 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [1.0.3] - 2026-05-06
+* Tweak GitHub actions
+* Update crates:
+    * rand == 0.10.1
+    * rust-htslib == 1.0.0
+    * scirs-integrate == 0.4.3
+
 ## [1.0.2] - 2026-05-05
 * Tweak GitHub actions
 * Refine documentation of the software